Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

61762644 .. 61764111

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGATCCTCAGAAAAGCAAGATTTTGGTAATCGGAGGCACCGGCTACATCGGCAAGTTCATCGTTGAAGCGAGCGCAAAGGCTAATCATCCCACATTTGCTCTTGTTAGGGAGACCACTGTCAATGACCCTGCCAAGGGAAAACTTATTCAAAATTTCAAGAACTTGGGAGTCACTTTGCTCTATGGAGATCTCAATGACGAGCACGAGAGTTTGGTGAAGGTGATCAAAAAGGTGGACGTGGTGATATCAACAGTGGCTGGCAGGCCGCTACCAGATCAAACCAAGCTCATTGCCGCTATTAAAGCAGCTGGTAATGTCAAGAGATTCCTCCCCTCGGAGTTCGGAAACGATATGGATAATGTAAAGGATGCAGTTGAGCCGGCCAAATCTGTAATTGAGAGCAAAGCCCAAATCCGGCGTGCTATAGAGGCCGGGGGGATTCCCTACACATATGTCTCCTGCAACTGCTTTGCAGGCTATTTTCTACCCACATTGGCACAGCCAGATGCCACTTCTCCACCCAGAGACAAAGTCATCATCTTAGGGGATGGAAATGCAAAGGCAATCTTTGCCGAGGAAGAGGACATTAGCACCTATACAATCCGAGCAGTTGATGACCCAAGAACACTGAACAAGGTTCTCCACCTCAGGCCTCCCCGAAACATTTACTCCTTCAATGAACTCGTTGCCTTGTGGGAGAAGAAAATTGGCAAAGCCCTCGGGAAGGTCTATGTTCCAGAGGACAAACTCCTAAACGATATTATAGAGACCCCATTTCCCCAAAATGCGATATTGGCGATCGAACACTCTGTATTTGTGAAAGGAGATCAAACCAGCTTTGAGATTGAGCCGTCGATCGGAGTCGAAGCTTCCGAGCTATACCCGGATGTTGAATACACCACTGTGGAGGACTACCTCGACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

312

Amino Acids

34.28

Weight (kDa)

5.21

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 308	1.5e-90	NmrA-like family
Epimerase	PF01370	9 - 90	2e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	13 - 155	5.7e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	2 cut(s)	272, 300
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 730, 863
AgsI	TTSAA	5 cut(s)	71, 155, 163, 682, 899
AjiI	CACGTC	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	5 cut(s)	292, 314, 843, 875, 883
AluI	AGCT	5 cut(s)	292, 314, 843, 875, 883
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	4 cut(s)	110, 466, 525, 767
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	4 cut(s)	269, 387, 435, 656
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	2 cut(s)	439, 890
AsuHPI	GGTGA	3 cut(s)	232, 238, 259
AvaI	CYCGRG	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	841
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 706, 740
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	439, 890
BcoDI	GTCTC	4 cut(s)	110, 466, 525, 767
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	272, 300, 312
BlsI	GCNGC	3 cut(s)	273, 301, 313
Bme1390I	CCNGG	2 cut(s)	439, 890
BmeT110I	CYCGRG	1 cut(s)	725
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	439, 890
BmsI	GCATC	2 cut(s)	364, 502
BoxI	GACNNNNGTC	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	439, 890
BsaI	GGTCTC	2 cut(s)	110, 767
BsaJI	CCNNGG	5 cut(s)	138, 339, 438, 579, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 730, 863
Bse118I	RCCGGY	2 cut(s)	44, 385
Bse21I	CCTNAGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	5 cut(s)	138, 339, 438, 579, 724
BseGI	GGATG	4 cut(s)	91, 379, 559, 898
BseLI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 730, 863
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	26, 667
BseXI	GCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	2 cut(s)	807, 864
BshFI	GGCC	4 cut(s)	271, 389, 437, 658
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	807, 864
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	5 cut(s)	45, 386, 421, 438, 890
BslI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 730, 863
BsmAI	GTCTC	4 cut(s)	110, 466, 525, 767
BsnI	GGCC	4 cut(s)	271, 389, 437, 658
Bso31I	GGTCTC	2 cut(s)	110, 767
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
BspACI	CCGC	2 cut(s)	272, 300
BspANI	GGCC	4 cut(s)	271, 389, 437, 658
BspCNI	CTCAG	2 cut(s)	25, 666
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	110, 767
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	44, 385
BssAI	RCCGGY	2 cut(s)	44, 385
BssECI	CCNNGG	5 cut(s)	138, 339, 438, 579, 724
BssMI	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	124, 259, 910
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	6 cut(s)	76, 265, 269, 387, 426, 481
BstDEI	CTNAG	3 cut(s)	12, 547, 653
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	4 cut(s)	91, 379, 559, 898
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	7 cut(s)	10, 196, 231, 283, 807, 835, 864
BstMAI	GTCTC	4 cut(s)	110, 466, 525, 767
BstMBI	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
BstMCI	CGRYCG	2 cut(s)	807, 864
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 308, 434, 480, 575, 800
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	437, 888
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	653
BsuRI	GGCC	4 cut(s)	271, 389, 437, 658
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	91, 379, 559, 898
BtsIMutI	CAGTG	4 cut(s)	120, 264, 632, 906
Cac8I	GCNNGC	6 cut(s)	76, 265, 269, 387, 426, 481
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	44, 385
DdeI	CTNAG	3 cut(s)	12, 547, 653
DpnI	GATC	7 cut(s)	9, 195, 230, 282, 806, 834, 863
DpnII	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	658
Eco31I	GGTCTC	2 cut(s)	110, 767
Eco32I	GATATC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	725
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaiI	YATR	9 cut(s)	189, 359, 431, 457, 459, 603, 738, 770, 886
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	272, 300, 312
FokI	GGATG	4 cut(s)	78, 386, 566, 905
Fsp4HI	GCNGC	3 cut(s)	272, 300, 312
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	272, 300, 312
HaeIII	GGCC	4 cut(s)	271, 389, 437, 658
HapII	CCGG	5 cut(s)	45, 386, 421, 438, 890
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	4 cut(s)	174, 330, 445, 867
HpaII	CCGG	5 cut(s)	45, 386, 421, 438, 890
HphI	GGTGA	3 cut(s)	232, 238, 259
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	7 cut(s)	15, 38, 343, 350, 611, 866, 880
Hpy188III	TCNNGA	4 cut(s)	163, 325, 727, 743
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	3 cut(s)	217, 688, 724
HpyCH4III	ACNGT	3 cut(s)	124, 259, 910
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	377, 468, 479, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 308, 434, 480, 575, 800
HpyF3I	CTNAG	3 cut(s)	12, 547, 653
HpySE526I	ACGT	1 cut(s)	243
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	364, 502
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	7 cut(s)	9, 195, 230, 282, 806, 834, 863
MboI	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
MboII	GAAGA	2 cut(s)	596, 718
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	4 cut(s)	157, 399, 711, 929
MlyI	GAGTC	2 cut(s)	183, 876
MroNI	GCCGGC	1 cut(s)	385
MseI	TTAA	2 cut(s)	306, 937
MslI	CAYNNNNRTG	1 cut(s)	908
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	5 cut(s)	45, 386, 421, 438, 890
MspR9I	CCNGG	2 cut(s)	439, 890
MwoI	GCNNNNNNNGC	6 cut(s)	54, 308, 434, 480, 575, 800
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	2 cut(s)	439, 890
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
NgoMIV	GCCGGC	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	908
PceI	AGGCCT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	330, 445
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	3 cut(s)	273, 301, 313
Ple19I	CGATCG	2 cut(s)	807, 864
PleI	GAGTC	2 cut(s)	182, 875
PpsI	GAGTC	2 cut(s)	182, 875
PshAI	GACNNNNGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	536
PvuI	CGATCG	2 cut(s)	807, 864
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	2 cut(s)	306, 937
SatI	GCNGC	3 cut(s)	272, 300, 312
Sau3AI	GATC	7 cut(s)	7, 193, 228, 280, 804, 832, 861
SchI	GAGTC	2 cut(s)	183, 876
ScrFI	CCNGG	2 cut(s)	439, 890
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	364, 502
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	908
Sse9I	AATT	4 cut(s)	157, 399, 711, 929
SseBI	AGGCCT	1 cut(s)	658
SsiI	CCGC	2 cut(s)	272, 300
StuI	AGGCCT	1 cut(s)	658
StyD4I	CCNGG	2 cut(s)	437, 888
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	124, 259, 910
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	807, 860, 870, 924
TasI	AATT	4 cut(s)	157, 399, 711, 929
TauI	GCSGC	2 cut(s)	274, 302
TfiI	GAWTC	2 cut(s)	330, 445
Tru1I	TTAA	2 cut(s)	306, 937
Tru9I	TTAA	2 cut(s)	306, 937
TscAI	CASTG	4 cut(s)	127, 264, 639, 913
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	52, 699
TspRI	CASTG	4 cut(s)	127, 264, 639, 913
Tth111I	GACNNNGTC	1 cut(s)	536
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.