Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

34153041 .. 34154895

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTGAGAAGAGCAAGGTTTTGATCATTGGAGGCACAGGCTACATTGGCAAGTTCATTGTTGAAGCCAGCGCAAAGGCTGGCCATCCAACCTTTGCTCTTGTCAGAGAGGCCACGGCCAACGACCCTGCCAAGTCCACCCTCATTCGCAATTTCAACAACTTGGGTGTCACTCTGCTCTACGGGGATCTTTATGACCACGAGAGCTTGGTGAAGGCGATCAAACAGGTGGACGTGGTGATATCAACTGTAGGTCACTTGGTACTTGCTGACCAGACCAAGATCATTGCTGCCATTAAAGAAGCTGGAAATGTCAAGAGATTTTTTCCGTCGGAGTTTGGAAACGATGTGGATCGTGTGCATGCAGTGGAGCCAGCTAAGTCTGCATTTGCAATCAAAGTCCAAATCCGGCGTGCCATAGAGGCGGAGGGCATCCCCTACACTTACGTGTCCAGCAACTGCTTTGCTGGCTATTTTCTGCCCACTTTGGCACAGCCCGGCGTCAGCTCTCCACCCAGAGACAAAGTCATTATCTTAGGGGATGGAAATCCGAAGGCTGTCTTCAACAAGGAAGAGGACATTGGAACTTATACCATCAGGGCCGTTGATGACCCAAGAACATTGAACAAGATTGTCTACATCAAGCCACCCGGAAACATTTACTCATTCAATGAGCTTGTTGCCTTGTGGGAGAAGAAGATTGGCAAAGTCCTTGAAAAGGTCTATGTTCCAGAGGACAAGCTTCTCCAGGACATTCAAGAGGCCCCAATTCCAATCAATGTGATATTAGCAATCAACCACTCAGTGTTCGTGAAGGGAGATCATACCAACTTCGAGATCGAGCCATCGTTCGGAGTGGAGGCTTCTGAGCTGTACCCTGATGTCAAGTACACCCCTGTGGAAGACTACCTCGACCAATTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

33.92

Weight (kDa)

5.61

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	195, 360
AcoI	YGGCCR	2 cut(s)	82, 117
AcyI	GRCGYC	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	805
AfaI	GTAC	3 cut(s)	264, 875, 890
AfiI	CCNNNNNNNGG	2 cut(s)	718, 851
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	7 cut(s)	65, 157, 565, 625, 670, 716, 758
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	2 cut(s)	446, 896
AluBI	AGCT	7 cut(s)	207, 305, 377, 507, 676, 742, 871
AluI	AGCT	7 cut(s)	207, 305, 377, 507, 676, 742, 871
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	195, 360
AlwNI	CAGNNNCTG	1 cut(s)	459
AoxI	GGCC	5 cut(s)	82, 111, 117, 600, 762
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	600, 763
AsuC2I	CCSGG	2 cut(s)	498, 651
AsuHPI	GGTGA	2 cut(s)	223, 250
BalI	TGGCCA	1 cut(s)	84
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	553, 909
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	4 cut(s)	93, 536, 602, 853
BceAI	ACGGC	2 cut(s)	132, 587
BciT130I	CCWGG	1 cut(s)	749
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	498, 651
BcoDI	GTCTC	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	498, 651, 749
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	600, 763
BmiI	GGNNCC	2 cut(s)	372, 765
BmrFI	CCNGG	3 cut(s)	498, 651, 749
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	553, 909
BpmI	CTGGAG	1 cut(s)	731
BpuMI	CCSGG	2 cut(s)	498, 651
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	2 cut(s)	351, 546
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	718, 851
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	2 cut(s)	351, 546
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	85, 432, 547
BseJI	GATNNNNATC	2 cut(s)	351, 546
BseLI	CCNNNNNNNGG	2 cut(s)	718, 851
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	816, 858
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	5 cut(s)	84, 113, 119, 602, 764
BsiSI	CCGG	3 cut(s)	409, 498, 651
BslI	CCNNNNNNNGG	2 cut(s)	718, 851
BsmAI	GTCTC	1 cut(s)	513
BsnI	GGCC	5 cut(s)	84, 113, 119, 602, 764
Bsp143I	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	5 cut(s)	84, 113, 119, 602, 764
BspCNI	CTCAG	2 cut(s)	815, 859
BspLI	GGNNCC	2 cut(s)	372, 765
BspPI	GGATC	2 cut(s)	195, 360
BspQI	GCTCTTC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	5, 567
BstACI	GRCGYC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	6 cut(s)	70, 82, 363, 375, 414, 469
BstDEI	CTNAG	5 cut(s)	6, 378, 535, 802, 867
BstDSI	CCRYGG	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	85, 432, 547
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	7 cut(s)	27, 190, 222, 285, 355, 823, 840
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 383, 422, 468
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	496, 649, 747
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	553, 909
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	5 cut(s)	84, 113, 119, 602, 764
BtgI	CCRYGG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	85, 432, 547
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 810
Cac8I	GCNNGC	6 cut(s)	70, 82, 363, 375, 414, 469
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	600, 763
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	263, 874, 889
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	3 cut(s)	263, 874, 889
DdeI	CTNAG	5 cut(s)	6, 378, 535, 802, 867
DpnI	GATC	7 cut(s)	26, 189, 221, 284, 354, 822, 839
DpnII	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
DraIII	CACNNNGTG	1 cut(s)	805
EaeI	YGGCCR	2 cut(s)	82, 117
Eam1104I	CTCTTC	2 cut(s)	5, 567
EarI	CTCTTC	2 cut(s)	5, 567
EciI	GGCGGA	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	747
EcoRV	GATATC	1 cut(s)	243
FaeI	CATG	1 cut(s)	365
FaiI	YATR	6 cut(s)	195, 363, 419, 591, 726, 825
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	3 cut(s)	72, 419, 554
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	5 cut(s)	84, 113, 119, 602, 764
HapII	CCGG	3 cut(s)	409, 498, 651
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	740
HpaII	CCGG	3 cut(s)	409, 498, 651
HphI	GGTGA	2 cut(s)	223, 250
Hpy166II	GTNNAC	4 cut(s)	138, 232, 637, 891
Hpy188I	TCNGA	5 cut(s)	107, 334, 552, 854, 868
Hpy188III	TCNNGA	5 cut(s)	316, 731, 758, 811, 835
Hpy8I	GTNNAC	4 cut(s)	138, 232, 637, 891
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	3 cut(s)	208, 547, 808
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	234, 447
HpyCH4V	TGCA	4 cut(s)	361, 365, 386, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 383, 422, 468
HpyF3I	CTNAG	5 cut(s)	6, 378, 535, 802, 867
HpySE526I	ACGT	2 cut(s)	234, 447
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	441
MaeII	ACGT	2 cut(s)	234, 447
MaeIII	GTNAC	2 cut(s)	169, 254
MalI	GATC	7 cut(s)	26, 189, 221, 284, 354, 822, 839
MboI	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
MboII	GAAGA	6 cut(s)	22, 553, 584, 706, 709, 914
MflI	RGATCY	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	3 cut(s)	151, 768, 917
MluNI	TGGCCA	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	113, 312
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	446, 896
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	3 cut(s)	409, 498, 651
MspR9I	CCNGG	3 cut(s)	498, 651, 749
MvaI	CCWGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	4 cut(s)	48, 383, 422, 468
NciI	CCSGG	2 cut(s)	498, 651
NdeII	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	372, 765
NmuCI	GTSAC	2 cut(s)	169, 254
NspI	RCATGY	1 cut(s)	365
OliI	CACNNNNGTG	2 cut(s)	446, 896
PaeI	GCATGC	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	5
PflFI	GACNNNGTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	372, 765
PspPI	GGNCC	2 cut(s)	600, 763
PstNI	CAGNNNCTG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	3 cut(s)	264, 875, 890
RsaNI	GTAC	3 cut(s)	263, 874, 889
RseI	CAYNNNNRTG	2 cut(s)	446, 896
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	7 cut(s)	24, 187, 219, 282, 352, 820, 837
Sau96I	GGNCC	2 cut(s)	600, 763
ScrFI	CCNGG	3 cut(s)	498, 651, 749
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	446, 896
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	151, 768, 917
SsiI	CCGC	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	496, 649, 747
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	237, 450
TaqI	TCGA	3 cut(s)	834, 840, 912
TasI	AATT	3 cut(s)	151, 768, 917
TatI	WGTACW	1 cut(s)	888
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	372, 810
TseFI	GTSAC	2 cut(s)	169, 254
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	169, 254
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	372, 810
Tth111I	GACNNNGTC	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	716
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.