Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

1736826 .. 1738519

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGAGAAGAGCAAAATTTTAATAATCGGAAGCACTGGTTCTATTGGAAAGTTTGTCGTTGAAGCGAGCGCGAAGGCCGGGCATCCGACCTTTGCTCTGGTTAGAGAGACCACGGTCAACGAACCTGCTAAGGCTAATCTCATTGAGAAGTTCAAGAACTTGGGTGTCACCTTGCTCTATGTAAGCATATTAATCTCTCTTAGTGGAGATCGTTATAACCATGAGAGTTTGGTGAAGGCGATCAAACAGGTGGACGTTGTGATATCGACGGTGGGTCGCCTGCAAACTGCAGACCAAACCAAGATCATTGCAGCCATCAAAGAAGCTGGCAATATCAAGAGATTTTTCCCGTCGGAGTTTGGAAACGATGTGGACCGAGTGAATGCAGTTGAGCCAGCCAAGTCTTCGTTTGACGCCAAGGTCCAAATCCGGCGTGCTATTGAGGCTGAGGGCATCCCCCACACTTATGTCTCCAGCAACTGCTTTGCTGGCTACTTTCTGCCGTCATTGGCACAGCCAGGTGCCACTTCTCCGCCCAGAGACAAAGTCACCATCTTAGGGGATGGAAATCCAAAAGCTGTCTTTAACAAGGAAGAGGACATAGGAACCTATACAATCAGGGCTGTTGATGATCCAAGAACATTGAACAAGATCCTCTTCCTGAAGCCTCCCCAGAACATCTACTCAATCAATGAGCTTGTTGCTCTGTGGGAGAAGAAGATTGGCAAAGTCCTTGAAAAAGTCTATGTCCCAGAGGACAAACTTCTCAAGGATATTGAAGCGGCCCCAATTCCAATCAATGTGATATTAGCAATCAACCACTCAGTGTTTGTGAACGGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

284

Amino Acids

30.87

Weight (kDa)

8.94

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	536, 785
AclWI	GGATC	3 cut(s)	629, 649, 850
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	417
AdeI	CACNNNGTG	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	5 cut(s)	65, 157, 649, 740, 782
AhdI	GACNNNNNGTC	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	3 cut(s)	329, 581, 700
AluI	AGCT	3 cut(s)	329, 581, 700
Alw26I	GTCTC	3 cut(s)	104, 478, 537
AlwI	GGATC	3 cut(s)	629, 649, 850
AlwNI	CAGNNNCTG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	78, 786
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	18
AseI	ATTAAT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	376, 424, 787
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	163, 247, 544
AvaII	GGWCC	2 cut(s)	376, 424
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	326, 560, 563
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	104, 478, 537
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	315, 786
BlsI	GCNGC	2 cut(s)	316, 787
Bme1390I	CCNGG	2 cut(s)	82, 522
Bme18I	GGWCC	2 cut(s)	376, 424
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmgT120I	GGNCC	3 cut(s)	376, 424, 787
BmiI	GGNNCC	3 cut(s)	526, 610, 789
BmrFI	CCNGG	2 cut(s)	82, 522
BmsI	GCATC	2 cut(s)	94, 465
BoxI	GACNNNNGTC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	460
Bpu10I	CCTNAGC	2 cut(s)	132, 450
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	114, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	845
BseDI	CCNNGG	2 cut(s)	114, 420
BseGI	GGATG	3 cut(s)	85, 456, 571
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	441, 840
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	80, 788
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	845
BsiSI	CCGG	2 cut(s)	81, 433
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	3 cut(s)	104, 478, 537
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	80, 788
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
BspACI	CCGC	2 cut(s)	536, 785
BspANI	GGCC	2 cut(s)	80, 788
BspCNI	CTCAG	2 cut(s)	442, 839
BspDI	ATCGAT	1 cut(s)	845
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	526, 610, 789
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	3 cut(s)	629, 649, 850
BspQI	GCTCTTC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	114, 420
BssMI	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	118, 274
Bst6I	CTCTTC	3 cut(s)	5, 591, 665
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	6 cut(s)	70, 284, 331, 399, 438, 493
BstDEI	CTNAG	6 cut(s)	6, 132, 203, 450, 559, 826
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	85, 456, 571
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	7 cut(s)	214, 246, 309, 637, 657, 845, 849
BstMAI	GTCTC	3 cut(s)	104, 478, 537
BstMBI	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 492
BstNI	CCWGG	1 cut(s)	522
BstPAI	GACNNNNGTC	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	80, 520
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
Bsu15I	ATCGAT	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	80, 788
BsuTUI	ATCGAT	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	85, 456, 571
BtsIMutI	CAGTG	2 cut(s)	36, 834
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	70, 284, 331, 399, 438, 493
CaiI	CAGNNNCTG	1 cut(s)	483
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	376, 424, 787
ClaI	ATCGAT	1 cut(s)	845
CseI	GACGC	1 cut(s)	425
CviAII	CATG	1 cut(s)	224
DdeI	CTNAG	6 cut(s)	6, 132, 203, 450, 559, 826
DpnI	GATC	7 cut(s)	213, 245, 308, 636, 656, 844, 848
DpnII	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
DraIII	CACNNNGTG	1 cut(s)	829
DrdI	GACNNNNNNGTC	1 cut(s)	422
DriI	GACNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	3 cut(s)	5, 591, 665
Eam1105I	GACNNNNNGTC	1 cut(s)	276
EarI	CTCTTC	3 cut(s)	5, 591, 665
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	376, 424
Eco57I	CTGAAG	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	227
FaiI	YATR	8 cut(s)	183, 191, 219, 225, 471, 605, 615, 750
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	315, 786
FokI	GGATG	3 cut(s)	72, 443, 578
Fsp4HI	GCNGC	2 cut(s)	315, 786
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	315, 786
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	80, 788
HapII	CCGG	2 cut(s)	81, 433
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	81, 433
HphI	GGTGA	3 cut(s)	163, 247, 544
Hpy166II	GTNNAC	4 cut(s)	121, 256, 376, 838
Hpy188I	TCNGA	4 cut(s)	32, 90, 358, 851
Hpy188III	TCNNGA	3 cut(s)	157, 340, 664
Hpy8I	GTNNAC	4 cut(s)	121, 256, 376, 838
Hpy99I	CGWCG	2 cut(s)	274, 358
HpyAV	CCTTC	2 cut(s)	70, 232
HpyCH4III	ACNGT	2 cut(s)	118, 274
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	4 cut(s)	286, 293, 314, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 492
HpyF3I	CTNAG	6 cut(s)	6, 132, 203, 450, 559, 826
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
LguI	GCTCTTC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	2 cut(s)	94, 465
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	169, 550
MalI	GATC	7 cut(s)	213, 245, 308, 636, 656, 844, 848
MboI	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
MboII	GAAGA	6 cut(s)	22, 399, 608, 652, 730, 733
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	2 cut(s)	18, 792
MmeI	TCCRAC	2 cut(s)	113, 336
MnlI	CCTC	6 cut(s)	439, 445, 592, 668, 681, 751
MseI	TTAA	3 cut(s)	23, 194, 588
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	2 cut(s)	81, 433
MspR9I	CCNGG	2 cut(s)	82, 522
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	446, 492
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	526, 610, 789
NmuCI	GTSAC	2 cut(s)	169, 550
PciSI	GCTCTTC	1 cut(s)	5
PctI	GAATGC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	316, 787
PshAI	GACNNNNGTC	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	526, 610, 789
PspPI	GGNCC	3 cut(s)	376, 424, 787
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	654
PsyI	GACNNNGTC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	3 cut(s)	23, 194, 588
SatI	GCNGC	2 cut(s)	315, 786
Sau3AI	GATC	7 cut(s)	211, 243, 306, 634, 654, 842, 846
Sau96I	GGNCC	3 cut(s)	376, 424, 787
ScrFI	CCNGG	2 cut(s)	82, 522
SfaNI	GCATC	2 cut(s)	94, 465
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	376, 424
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	2 cut(s)	18, 792
SsiI	CCGC	2 cut(s)	536, 785
StyD4I	CCNGG	2 cut(s)	80, 520
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	118, 274
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	269, 845
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	18, 792
TauI	GCSGC	1 cut(s)	788
Tru1I	TTAA	3 cut(s)	23, 194, 588
Tru9I	TTAA	3 cut(s)	23, 194, 588
TscAI	CASTG	2 cut(s)	43, 834
TseFI	GTSAC	2 cut(s)	169, 550
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	2 cut(s)	169, 550
TspRI	CASTG	2 cut(s)	43, 834
Tth111I	GACNNNGTC	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	376, 424
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.