Rmu_sc0013587.1_g000001

isoflavone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013587.1
OG0003310
Physical Location & Seq
Reverse (-)
306 .. 1130
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013587.1_g000001.1.cds

Sequence Viewer

Length: 534 bp
atgaaagcccaaatccgccgcgctatagaggctgaggggataccctacacttatgtctccagcaactgctttgcagcctattttctgcccacgttggcacagccaggagccacttctccacccagagacaaagtcatcatcttaggggatggaaatgcaaaggcaatcttcaacaaggaagacgacattggcacctatacgatccgagcggttgatgatccaagaacactgaacaaggtcctctacctcaagcctcctagaaacatttactccttcaatgaactggttgccttgtgggagaagaaaattggcaaagttcttgagaaggtctatgttccagaggacaaactcctcagcgacattcttgaggctcccattccgatcaatgtgatattggcaatcaaccactctgtgttcgtgaaaggagatcataccaacttcgagatcgagccgtctttcggagtcgaagcctccgagctgtacccggatgttaagtacaccactgtggaggagtatctcgaccaatttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

5.0

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 209
AccII CGCG 1 cut(s) 21
AciI CCGC 3 cut(s) 16, 19, 209
AclWI GGATC 2 cut(s) 196, 212
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 2 cut(s) 482, 497
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 172, 277
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 61, 120
AlwI GGATC 2 cut(s) 196, 212
AlwNI CAGNNNCTG 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 186
BbvCI CCTCAGC 2 cut(s) 33, 353
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 61, 120
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 2 cut(s) 19, 75
BlsI GCNGC 2 cut(s) 20, 76
Bme1390I CCNGG 2 cut(s) 105, 485
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 109, 193, 372
BmrFI CCNGG 2 cut(s) 105, 485
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 43
Bpu10I CCTNAGC 2 cut(s) 33, 353
BpuEI CTTGAG 3 cut(s) 233, 341, 386
BpuMI CCSGG 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 154, 493
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 24, 367
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 2 cut(s) 341, 524
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 2 cut(s) 61, 120
Bsp143I GATC 5 cut(s) 201, 217, 381, 427, 444
BspACI CCGC 3 cut(s) 16, 19, 209
BspCNI CTCAG 2 cut(s) 25, 366
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 109, 193, 372
BspPI GGATC 2 cut(s) 196, 212
BspT107I GGYRCC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 288
BssMI GATC 5 cut(s) 201, 217, 381, 427, 444
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 33, 142, 353
BstF5I GGATG 2 cut(s) 154, 493
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 204, 220, 384, 430, 447
BstMAI GTCTC 2 cut(s) 61, 120
BstMBI GATC 5 cut(s) 201, 217, 381, 427, 444
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 103, 483
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 154, 493
BtsIMutI CAGTG 2 cut(s) 227, 501
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 481, 496
CviQI GTAC 2 cut(s) 481, 496
DdeI CTNAG 3 cut(s) 33, 142, 353
DpnI GATC 5 cut(s) 203, 219, 383, 429, 446
DpnII GATC 5 cut(s) 201, 217, 381, 427, 444
DraIII CACNNNGTG 1 cut(s) 412
EciI GGCGGA 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 103
FaiI YATR 5 cut(s) 26, 54, 198, 333, 432
FalI AAGNNNNNCTT 2 cut(s) 152, 184
Fnu4HI GCNGC 2 cut(s) 19, 75
FokI GGATG 2 cut(s) 161, 500
Fsp4HI GCNGC 2 cut(s) 19, 75
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 19, 75
GsuI CTGGAG 1 cut(s) 43
HapII CCGG 1 cut(s) 485
HhaI GCGC 1 cut(s) 23
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 462
HpaII CCGG 1 cut(s) 485
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 4 cut(s) 206, 381, 461, 475
Hpy188III TCNNGA 6 cut(s) 320, 338, 365, 418, 442, 518
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 283, 319
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 74, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 33, 142, 353
HpySE526I ACGT 1 cut(s) 92
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 5 cut(s) 201, 217, 381, 427, 444
LmnI GCTCC 2 cut(s) 107, 376
LpnPI CCDG 7 cut(s) 73, 90, 117, 136, 269, 351, 498
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 92
MalI GATC 5 cut(s) 203, 219, 383, 429, 446
MbiI CCGCTC 1 cut(s) 209
MboI GATC 5 cut(s) 201, 217, 381, 427, 444
MboII GAAGA 3 cut(s) 160, 191, 313
MluCI AATT 2 cut(s) 306, 524
MlyI GAGTC 1 cut(s) 471
MseI TTAA 2 cut(s) 492, 532
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 105, 485
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 485
NdeII GATC 5 cut(s) 201, 217, 381, 427, 444
NlaIV GGNNCC 3 cut(s) 109, 193, 372
OliI CACNNNNGTG 1 cut(s) 503
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 20, 76
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 109, 193, 372
PspPI GGNCC 1 cut(s) 238
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 2 cut(s) 482, 497
RsaNI GTAC 2 cut(s) 481, 496
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 2 cut(s) 492, 532
SatI GCNGC 2 cut(s) 19, 75
Sau3AI GATC 5 cut(s) 201, 217, 381, 427, 444
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 105, 485
SetI ASST 6 cut(s) 95, 197, 240, 249, 330, 480
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 248, 320, 365
SmoI CTYRAG 3 cut(s) 248, 320, 365
Sse9I AATT 2 cut(s) 306, 524
SsiI CCGC 3 cut(s) 16, 19, 209
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 103, 483
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 441, 447, 465, 519
TasI AATT 2 cut(s) 306, 524
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 492, 532
Tru9I TTAA 2 cut(s) 492, 532
TscAI CASTG 2 cut(s) 234, 508
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 17, 294
TspRI CASTG 2 cut(s) 234, 508
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 238
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.