Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8287695 .. 8289331

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCGCTCAGAAAAGCAAGATCTTGATCATCGGAGGCACCGGCTATATAGGCAAGTTCATCGTCGAAGCGAGCGCAAAGGCTAGCCATCCCACCTTTCTTCTTGTTAGGGAGACCACAGGGGGGGATCTTTATGATCATGAGAGCTTGGTGAAGGCGATCAAACAGGTCGATGTGGTGATATCAGCGGTGGGCCACATGCAGATAGCAGATCAAACCAAGATCATTGCGGCCATCAAAGAAGCTGGTAATGTCAAGAGATTCTTCCCCTCGGAATTTGGAAACGATGTGGATCGTGTACATGCGGTTGAGCCAGCAAAATCTGCATTTGCAATGAAAGCCCAAATCCGCCGCGCTATAGAGGCTGAGGGGATACCCTACACTTATGTCTCCAGCAACTGCTTTGCAGCCTATTTTCTGCCTACATTGGCACAGCCAGGAGCCACTTCTCCACCCAGAGACAAAGTCATCATCTTAGGGGATGGAAATGCAAAGGCAATCTTCAACAAGGAAGACGACATTGGCACCTATACGATCCGAGCGGTTGATGATCCAAGAACACTGAACAAGGTCCTCTACCTCAAGCCTCCCAGAAACATTTACTCCTTCAATGAACTCGTTGCCTTGTGGGAGAAGAAAATTGGCAAAGTTCTTGAGAAGGTCTATGTTCCAGAGGACAAACTCCTCAGCGACATTCTTGGCTCCAATTCCGATCAATGTGATATTGGCAATCAACCACTCTGTGTTTGTGAAAGGAGATCATACCAACTTCGAGATCGAGCCGTCTTTCGAGTCGAAGCCTCCGAGCTGTACCCGGATGTTAAGTACACCACTGTGGAGGATTATCTCGACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

287

Amino Acids

31.86

Weight (kDa)

6.46

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 283	1.9e-77	NmrA-like family
NAD_binding_10	PF13460	12 - 131	2.4e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 524
AccBSI	CCGCTC	2 cut(s)	8, 542
AccII	CGCG	1 cut(s)	354
AciI	CCGC	7 cut(s)	6, 188, 230, 305, 349, 352, 542
AclWI	GGATC	4 cut(s)	135, 300, 529, 545
AcoI	YGGCCR	2 cut(s)	3, 231
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	300, 812, 827
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	505, 610
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AleI	CACNNNNGTG	1 cut(s)	833
AluBI	AGCT	3 cut(s)	147, 245, 808
AluI	AGCT	3 cut(s)	147, 245, 808
Alw26I	GTCTC	3 cut(s)	107, 394, 453
AlwI	GGATC	4 cut(s)	135, 300, 529, 545
AlwNI	CAGNNNCTG	1 cut(s)	399
AoxI	GGCC	3 cut(s)	3, 193, 231
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	77, 356
AspS9I	GGNCC	2 cut(s)	193, 571
AsuC2I	CCSGG	1 cut(s)	815
AsuHPI	GGTGA	2 cut(s)	163, 190
AsuNHI	GCTAGC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	38, 524
BbsI	GAAGAC	1 cut(s)	519
BbvCI	CCTCAGC	2 cut(s)	366, 686
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	96, 242, 476
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	2 cut(s)	27, 136
BcnI	CCSGG	1 cut(s)	815
BcoDI	GTCTC	3 cut(s)	107, 394, 453
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	4 cut(s)	6, 231, 352, 408
BlsI	GCNGC	4 cut(s)	7, 232, 353, 409
Bme1390I	CCNGG	2 cut(s)	438, 815
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	193, 571
BmiI	GGNNCC	4 cut(s)	40, 442, 526, 703
BmrFI	CCNGG	2 cut(s)	438, 815
BmtI	GCTAGC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	2 cut(s)	366, 686
BpuEI	CTTGAG	2 cut(s)	566, 674
BpuMI	CCSGG	1 cut(s)	815
BsaBI	GATNNNNATC	2 cut(s)	26, 291
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	2 cut(s)	225, 339
Bse8I	GATNNNNATC	2 cut(s)	26, 291
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	3 cut(s)	88, 487, 823
BseJI	GATNNNNATC	2 cut(s)	26, 291
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	2 cut(s)	225, 339
BseMII	CTCAG	3 cut(s)	23, 357, 700
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	3 cut(s)	5, 195, 233
BshNI	GGYRCC	2 cut(s)	38, 524
BsiSI	CCGG	2 cut(s)	42, 815
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	3 cut(s)	107, 394, 453
BsnI	GGCC	3 cut(s)	5, 195, 233
Bso31I	GGTCTC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	298
BspACI	CCGC	7 cut(s)	6, 188, 230, 305, 349, 352, 542
BspANI	GGCC	3 cut(s)	5, 195, 233
BspCNI	CTCAG	3 cut(s)	22, 358, 699
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	40, 442, 526, 703
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	4 cut(s)	135, 300, 529, 545
BspT107I	GGYRCC	2 cut(s)	38, 524
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	2 cut(s)	8, 542
BsrDI	GCAATG	2 cut(s)	225, 339
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	73, 85, 315
BstDEI	CTNAG	4 cut(s)	9, 366, 475, 686
BstF5I	GGATG	3 cut(s)	88, 487, 823
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	77, 356
BstMAI	GTCTC	3 cut(s)	107, 394, 453
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 323, 338, 362
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	2 cut(s)	202, 305
BstSCI	CCNGG	2 cut(s)	436, 813
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	21, 127
BstYI	RGATCY	2 cut(s)	21, 127
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	5, 195, 233
BtsCI	GGATG	3 cut(s)	88, 487, 823
BtsIMutI	CAGTG	2 cut(s)	560, 831
Cac8I	GCNNGC	3 cut(s)	73, 85, 315
CaiI	CAGNNNCTG	1 cut(s)	399
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	2 cut(s)	77, 356
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	193, 571
Csp6I	GTAC	3 cut(s)	299, 811, 826
CviAII	CATG	3 cut(s)	140, 199, 302
CviQI	GTAC	3 cut(s)	299, 811, 826
DdeI	CTNAG	4 cut(s)	9, 366, 475, 686
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	2 cut(s)	3, 231
EciI	GGCGGA	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	183
FaeI	CATG	3 cut(s)	143, 202, 305
FalI	AAGNNNNNCTT	4 cut(s)	248, 280, 485, 517
FatI	CATG	3 cut(s)	139, 198, 301
FbaI	TGATCA	2 cut(s)	27, 136
Fnu4HI	GCNGC	4 cut(s)	6, 231, 352, 408
FokI	GGATG	3 cut(s)	75, 494, 830
Fsp4HI	GCNGC	4 cut(s)	6, 231, 352, 408
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	76, 355
GluI	GCNGC	4 cut(s)	6, 231, 352, 408
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	5, 195, 233
HapII	CCGG	2 cut(s)	42, 815
HhaI	GCGC	2 cut(s)	77, 356
Hin1II	CATG	3 cut(s)	143, 202, 305
Hin6I	GCGC	2 cut(s)	75, 354
HinP1I	GCGC	2 cut(s)	75, 354
HinfI	GANTC	2 cut(s)	261, 792
HpaII	CCGG	2 cut(s)	42, 815
HphI	GGTGA	2 cut(s)	163, 190
Hpy166II	GTNNAC	2 cut(s)	299, 828
Hpy188I	TCNGA	6 cut(s)	12, 35, 274, 539, 712, 805
Hpy188III	TCNNGA	7 cut(s)	25, 140, 256, 653, 671, 773, 848
Hpy8I	GTNNAC	2 cut(s)	299, 828
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	148, 616, 652
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4V	TGCA	5 cut(s)	202, 326, 332, 407, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 323, 338, 362
HpyF3I	CTNAG	4 cut(s)	9, 366, 475, 686
Hsp92II	CATG	3 cut(s)	143, 202, 305
HspAI	GCGC	2 cut(s)	75, 354
Ksp22I	TGATCA	2 cut(s)	27, 136
LmnI	GCTCC	2 cut(s)	440, 707
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	84
MbiI	CCGCTC	2 cut(s)	8, 542
MboII	GAAGA	5 cut(s)	92, 256, 493, 524, 646
MflI	RGATCY	2 cut(s)	21, 127
MluCI	AATT	4 cut(s)	275, 639, 706, 854
MlyI	GAGTC	1 cut(s)	801
MseI	TTAA	2 cut(s)	822, 862
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	42, 815
MspR9I	CCNGG	2 cut(s)	438, 815
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	51, 323, 338, 362
NciI	CCSGG	1 cut(s)	815
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	143, 202, 305
NlaIV	GGNNCC	4 cut(s)	40, 442, 526, 703
NspI	RCATGY	2 cut(s)	202, 305
OliI	CACNNNNGTG	1 cut(s)	833
PagI	TCATGA	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	7, 232, 353, 409
PleI	GAGTC	1 cut(s)	800
PpsI	GAGTC	1 cut(s)	800
PpuMI	RGGWCCY	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	4 cut(s)	40, 442, 526, 703
PspPI	GGNCC	2 cut(s)	193, 571
PspPPI	RGGWCCY	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	21, 127
PsyI	GACNNNGTC	1 cut(s)	464
RsaI	GTAC	3 cut(s)	300, 812, 827
RsaNI	GTAC	3 cut(s)	299, 811, 826
RseI	CAYNNNNRTG	1 cut(s)	833
SaqAI	TTAA	2 cut(s)	822, 862
SatI	GCNGC	4 cut(s)	6, 231, 352, 408
Sau96I	GGNCC	2 cut(s)	193, 571
SchI	GAGTC	1 cut(s)	801
ScrFI	CCNGG	2 cut(s)	438, 815
SetI	ASST	9 cut(s)	98, 149, 171, 247, 530, 573, 582, 663, 810
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	2 cut(s)	581, 653
SmoI	CTYRAG	2 cut(s)	581, 653
Sse9I	AATT	4 cut(s)	275, 639, 706, 854
SsiI	CCGC	7 cut(s)	6, 188, 230, 305, 349, 352, 542
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	436, 813
TaaI	ACNGT	1 cut(s)	835
TaqI	TCGA	7 cut(s)	66, 171, 772, 778, 790, 795, 849
TasI	AATT	4 cut(s)	275, 639, 706, 854
TatI	WGTACW	2 cut(s)	298, 825
TauI	GCSGC	3 cut(s)	8, 233, 354
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	822, 862
Tru9I	TTAA	2 cut(s)	822, 862
TscAI	CASTG	2 cut(s)	567, 838
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	49, 350, 627
TspRI	CASTG	2 cut(s)	567, 838
Tth111I	GACNNNGTC	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	2 cut(s)	202, 305
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.