Rh6BG423600

isoflavone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003310
Physical Location & Seq
Forward (+)
64609703 .. 64611164
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG423600.1

Sequence Viewer

Length: 744 bp
ATGGCTGATCCTCAGAAAAGCAAGATTTTGGGAGATCTTCATGATGGACATGACTGTTTGGCGAAGGTGATCAAACAGGTAGACGTGGTGATTTCAGCTGTGAATCGCATGCAGTTAGTAGATCAAACCCAGATCATTGCCGCCATTAAAGAAGCCGGTAATGTCAAGAGATTCTTCCCCTCGGAGTTTGGAAATGATGCTGATCGTGTTCATGCAGTTGAGCCAGCCAAATCTGCATTTGCGACCAAAGCGCAATTCCGGCGTGCCATAGAGGGGATACCCTACACATATGTCTCGAGCAACTGCTTTGCAGGCTATTTTCTACCCACATTGGCACAGCCAGGTGCTACTTCTCCACCAAGAGACAAAGTCATCATCGAAGAGGACATCGGCACCTACACAATCCGAGCAGTTGATGACCCAAGAACACTGAACAAGGTCCTCTACCTCAAGCCTCCCAAAAACATTTACTCATTCAATGAACTGGTTGCCTTGTGGGAGAAGAAATTTGGCAAAGCCCTCGGGAAGGTCTATGTTCCAGAGGACAAACTCCTCAACGATATTATAGGTCAAGACCCCATGCCATTTCCCCAAAATGTGATATTGGCGATCAACCACTCTGTGTTTGTGAATGGAGATCAAACCAACTTCGAGATTGAACCATCGTTCGGAGTCGAAGCTTCCGAGCTATACCCGGATGTTGAATACACAACTGTGGAGGACTACCTCGACCAATTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

247

Amino Acids

27.57

Weight (kDa)

4.99

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 11 - 243 3.6e-67 NmrA-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 81
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 2
AcsI RAATTY 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 622
AfiI CCNNNNNNNGG 3 cut(s) 273, 526, 668
AgsI TTSAA 3 cut(s) 478, 659, 704
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 3 cut(s) 98, 680, 688
AluI AGCT 3 cut(s) 98, 680, 688
Alw26I GTCTC 2 cut(s) 298, 357
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 2 cut(s) 295, 521
ApoI RAATTY 1 cut(s) 506
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 79, 100
AvaI CYCGRG 2 cut(s) 295, 521
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 392
BccI CCATC 2 cut(s) 38, 670
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 2 cut(s) 298, 357
BfuI GTATCC 1 cut(s) 270
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 342, 695
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 2 cut(s) 295, 521
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 2 cut(s) 342, 695
BmsI GCATC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 695
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 180, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 526, 668
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 180, 520
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 273, 526, 668
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 392
BsiHKCI CYCGRG 2 cut(s) 295, 521
BsiSI CCGG 3 cut(s) 156, 259, 695
BslI CCNNNNNNNGG 3 cut(s) 273, 526, 668
BsmAI GTCTC 2 cut(s) 298, 357
BsoBI CYCGRG 2 cut(s) 295, 521
Bsp143I GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
BspACI CCGC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 489
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 180, 520
BssMI GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 56, 715
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 110, 225, 264, 313
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 703
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 8 cut(s) 10, 37, 72, 124, 135, 205, 612, 640
BstMAI GTCTC 2 cut(s) 298, 357
BstMBI GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
BstMWI GCNNNNNNNGC 4 cut(s) 233, 248, 259, 312
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 340, 693
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 1 cut(s) 270
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 110, 225, 264, 313
CciI TCATGA 1 cut(s) 40
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 439
CviAII CATG 5 cut(s) 41, 50, 109, 212, 580
DdeI CTNAG 1 cut(s) 12
DpnI GATC 8 cut(s) 9, 36, 71, 123, 134, 204, 611, 639
DpnII GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
DraIII CACNNNGTG 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 439
Eco88I CYCGRG 2 cut(s) 295, 521
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 5 cut(s) 44, 53, 112, 215, 583
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 5 cut(s) 40, 49, 108, 211, 579
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 141
HapII CCGG 3 cut(s) 156, 259, 695
HhaI GCGC 1 cut(s) 253
Hin1II CATG 5 cut(s) 44, 53, 112, 215, 583
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 3 cut(s) 103, 171, 672
HpaII CCGG 3 cut(s) 156, 259, 695
HphI GGTGA 2 cut(s) 79, 100
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 15, 184, 407, 671, 685
Hpy188III TCNNGA 7 cut(s) 41, 166, 295, 523, 539, 572, 652
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 58, 520
HpyCH4III ACNGT 2 cut(s) 56, 715
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 112, 215, 236, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 248, 259, 312
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 5 cut(s) 44, 53, 112, 215, 583
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 84
MalI GATC 8 cut(s) 9, 36, 71, 123, 134, 204, 611, 639
MboI GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
MboII GAAGA 4 cut(s) 29, 166, 392, 514
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 254, 506, 734
MlyI GAGTC 1 cut(s) 681
MseI TTAA 2 cut(s) 147, 742
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 156, 259, 695
MspR9I CCNGG 2 cut(s) 342, 695
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 233, 248, 259, 312
NciI CCSGG 1 cut(s) 695
NdeI CATATG 1 cut(s) 289
NdeII GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
NlaIII CATG 5 cut(s) 44, 53, 112, 215, 583
NlaIV GGNNCC 1 cut(s) 394
NspI RCATGY 1 cut(s) 112
OliI CACNNNNGTG 1 cut(s) 713
PaeI GCATGC 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 295
PagI TCATGA 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PfeI GAWTC 2 cut(s) 103, 171
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 439
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 713
SaqAI TTAA 2 cut(s) 147, 742
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 8 cut(s) 7, 34, 69, 121, 132, 202, 609, 637
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 2 cut(s) 342, 695
SfaNI GCATC 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 295
SinI GGWCC 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 2 cut(s) 295, 449
SmoI CTYRAG 2 cut(s) 295, 449
SphI GCATGC 1 cut(s) 112
Sse9I AATT 3 cut(s) 254, 506, 734
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 340, 693
TaaI ACNGT 2 cut(s) 56, 715
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 296, 378, 651, 675, 729
TasI AATT 3 cut(s) 254, 506, 734
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 103, 171
Tru1I TTAA 2 cut(s) 147, 742
Tru9I TTAA 2 cut(s) 147, 742
TscAI CASTG 1 cut(s) 435
TspDTI ATGAA 3 cut(s) 29, 200, 495
TspRI CASTG 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 1 cut(s) 506
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.