AT1G76010

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002565
Physical Location & Seq
Reverse (-)
28528059 .. 28531771
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76010.1

Sequence Viewer

Length: 1053 bp
ATGGATAAGTATCAACGAGTGGTGAAGCCGAAAGCGGATACGCCGATTGATGCGAATGAGATTCGTATCACTAGTCAAGGCAGGGCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGATAAAGGGTCAACTGAAGTTGTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAGAGAAGGATCCCTGATCTTCATCAGAACACATCTATTGGATCCACAGACATCACAGACACATGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATAACCATTACCCTATCCAAGATTGAGCTTAATACCTCCTCTGTTGGGTACCAGTGCCCAATTCCTATTGAGTTGGTGAAGCCAATGGGCGATATTGATTATGAAGGACGAGAGGGTTCACCTGGTGGCAGAGGGAGGGGAAGAGGAAGAGGAAGGGGAAGAGGAAGGGGGCGAGGTGGCAGAGGAAATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGAGCAGTCCTATGGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGTGGAAGAGGAGGATACAATGGTCCTCCGAATGAGTATGATGCACCACAAGATGGAGGTTACGGTTACGATGCTCCTCATGAACACCGTGGATATGATGACCGTGGTGGTTATGATGCCCCTCCTCAGGGCCGTGGTGGTTACGATGGTCCTCAGGGTCGCGGTGGTTACGATGGTCCTCAGGGTCGCCGTGGTTATGATGGTCCTCCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAAGGCCGTGGTGGTTATGATGGTCCTTCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAGGGCCGTGGTGGTTATGATGGTCCTCAGGGTCGTGGGCGTGGACGTGGACGTGGAAGGGGAGGACGTGGAAGAGGAGGAGGACGTGGTGGTGATGGTGGTTTCAACAACAGATCAGATGGACCACCAGTCCAGGCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

350

Amino Acids

37.38

Weight (kDa)

9.78

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 3.1e-18 Alba
Rpp20 PF12328 41 - 110 4.1e-06 Rpp20 subunit of nuclear RNase MRP and P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 659
AccII CGCG 1 cut(s) 768
AciI CCGC 2 cut(s) 35, 768
AclI AACGTT 1 cut(s) 522
AclWI GGATC 4 cut(s) 205, 218, 237, 250
AcuI CTGAAG 2 cut(s) 104, 159
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 8 cut(s) 366, 659, 733, 734, 818, 848, 878, 908
AgsI TTSAA 2 cut(s) 151, 1012
AhdI GACNNNNNGTC 1 cut(s) 1034
AhlI ACTAGT 1 cut(s) 71
AjiI CACGTC 5 cut(s) 581, 953, 959, 974, 992
AjnI CCWGG 2 cut(s) 442, 1038
AluBI AGCT 4 cut(s) 167, 196, 349, 1046
AluI AGCT 4 cut(s) 167, 196, 349, 1046
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 4 cut(s) 205, 218, 237, 250
AoxI GGCC 6 cut(s) 283, 736, 820, 850, 880, 910
ApeKI GCWGC 3 cut(s) 594, 1043, 1046
Asp700I GAANNNNTTC 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 369
AsuHPI GGTGA 5 cut(s) 34, 91, 409, 432, 1010
AvaII GGWCC 9 cut(s) 629, 755, 782, 809, 839, 869, 899, 929, 1028
AxyI CCTNAGG 5 cut(s) 732, 759, 786, 816, 933
BaeGI GKGCMC 2 cut(s) 88, 380
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BamHI GGATCC 2 cut(s) 210, 242
BanI GGYRCC 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbvI GCAGC 2 cut(s) 606, 1033
BceAI ACGGC 6 cut(s) 723, 780, 807, 837, 867, 897
BciT130I CCWGG 2 cut(s) 444, 1040
BciVI GTATCC 2 cut(s) 31, 614
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 1 cut(s) 72
BfuI GTATCC 2 cut(s) 31, 614
BisI GCNGC 3 cut(s) 595, 1044, 1047
BlsI GCNGC 3 cut(s) 596, 1045, 1048
Bme1390I CCNGG 2 cut(s) 444, 1040
Bme18I GGWCC 9 cut(s) 629, 755, 782, 809, 839, 869, 899, 929, 1028
BmeRI GACNNNNNGTC 1 cut(s) 1034
BmgBI CACGTC 5 cut(s) 581, 953, 959, 974, 992
BmiI GGNNCC 4 cut(s) 212, 244, 270, 371
BmrFI CCNGG 2 cut(s) 444, 1040
BmsI GCATC 4 cut(s) 40, 637, 667, 712
BpuEI CTTGAG 1 cut(s) 831
BsaBI GATNNNNATC 3 cut(s) 9, 65, 222
BsaJI CCNNGG 8 cut(s) 694, 709, 739, 796, 823, 853, 883, 913
Bsc4I CCNNNNNNNGG 8 cut(s) 366, 659, 733, 734, 818, 848, 878, 908
Bse1I ACTGG 2 cut(s) 373, 1034
Bse21I CCTNAGG 5 cut(s) 732, 759, 786, 816, 933
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 3 cut(s) 9, 65, 222
BseBI CCWGG 2 cut(s) 444, 1040
BseDI CCNNGG 8 cut(s) 694, 709, 739, 796, 823, 853, 883, 913
BseJI GATNNNNATC 3 cut(s) 9, 65, 222
BseLI CCNNNNNNNGG 8 cut(s) 366, 659, 733, 734, 818, 848, 878, 908
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 7 cut(s) 746, 773, 800, 830, 890, 920, 947
BseNI ACTGG 2 cut(s) 373, 1034
BseRI GAGGAG 7 cut(s) 349, 630, 672, 720, 804, 996, 999
BseSI GKGCMC 2 cut(s) 88, 380
BseXI GCAGC 2 cut(s) 606, 1033
Bsh1236I CGCG 1 cut(s) 768
BshFI GGCC 6 cut(s) 285, 738, 822, 852, 882, 912
BshNI GGYRCC 1 cut(s) 369
BslI CCNNNNNNNGG 8 cut(s) 366, 659, 733, 734, 818, 848, 878, 908
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 6 cut(s) 285, 738, 822, 852, 882, 912
Bsp1286I GDGCHC 2 cut(s) 88, 380
Bsp143I GATC 4 cut(s) 210, 217, 242, 1019
BspACI CCGC 2 cut(s) 35, 768
BspANI GGCC 6 cut(s) 285, 738, 822, 852, 882, 912
BspCNI CTCAG 7 cut(s) 745, 772, 799, 829, 889, 919, 946
BspFNI CGCG 1 cut(s) 768
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 212, 244, 270, 371
BspPI GGATC 4 cut(s) 205, 218, 237, 250
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 373, 1034
BssECI CCNNGG 8 cut(s) 694, 709, 739, 796, 823, 853, 883, 913
BssMI GATC 4 cut(s) 210, 217, 242, 1019
Bst2UI CCWGG 2 cut(s) 444, 1040
Bst4CI ACNGT 4 cut(s) 181, 671, 695, 710
Bst6I CTCTTC 8 cut(s) 120, 157, 457, 463, 475, 568, 607, 973
BstDEI CTNAG 7 cut(s) 732, 759, 786, 816, 876, 906, 933
BstDSI CCRYGG 8 cut(s) 694, 709, 739, 796, 823, 853, 883, 913
BstENI CCTNNNNNAGG 1 cut(s) 846
BstFNI CGCG 1 cut(s) 768
BstKTI GATC 4 cut(s) 213, 220, 245, 1022
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 4 cut(s) 210, 217, 242, 1019
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 2 cut(s) 444, 1040
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 442, 1038
BstSLI GKGCMC 2 cut(s) 88, 380
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 2 cut(s) 606, 1033
BstX2I RGATCY 2 cut(s) 210, 242
BstYI RGATCY 2 cut(s) 210, 242
Bsu36I CCTNAGG 5 cut(s) 732, 759, 786, 816, 933
BsuI GTATCC 2 cut(s) 31, 614
BsuRI GGCC 6 cut(s) 285, 738, 822, 852, 882, 912
BtgI CCRYGG 8 cut(s) 694, 709, 739, 796, 823, 853, 883, 913
BtgZI GCGATG 1 cut(s) 122
BtrI CACGTC 5 cut(s) 581, 953, 959, 974, 992
BtsIMutI CAGTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 685
CseI GACGC 1 cut(s) 600
CsiI ACCWGGT 1 cut(s) 442
Csp6I GTAC 1 cut(s) 370
CviAII CATG 4 cut(s) 264, 311, 530, 686
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 7 cut(s) 732, 759, 786, 816, 876, 906, 933
DpnI GATC 4 cut(s) 212, 219, 244, 1021
DpnII GATC 4 cut(s) 210, 217, 242, 1019
DraIII CACNNNGTG 1 cut(s) 446
DrdI GACNNNNNNGTC 1 cut(s) 597
DriI GACNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 597
Eam1104I CTCTTC 8 cut(s) 120, 157, 457, 463, 475, 568, 607, 973
Eam1105I GACNNNNNGTC 1 cut(s) 1034
EarI CTCTTC 8 cut(s) 120, 157, 457, 463, 475, 568, 607, 973
Eco147I AGGCCT 1 cut(s) 285
Eco47I GGWCC 9 cut(s) 629, 755, 782, 809, 839, 869, 899, 929, 1028
Eco57I CTGAAG 2 cut(s) 104, 159
Eco81I CCTNAGG 5 cut(s) 732, 759, 786, 816, 933
EcoNI CCTNNNNNAGG 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 442, 1038
FaeI CATG 4 cut(s) 267, 314, 533, 689
FatI CATG 4 cut(s) 263, 310, 529, 685
Fnu4HI GCNGC 3 cut(s) 595, 1044, 1047
Fsp4HI GCNGC 3 cut(s) 595, 1044, 1047
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 595, 1044, 1047
HaeIII GGCC 6 cut(s) 285, 738, 822, 852, 882, 912
HgaI GACGC 1 cut(s) 600
Hin1II CATG 4 cut(s) 267, 314, 533, 689
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 61, 112
HphI GGTGA 5 cut(s) 34, 91, 409, 432, 1010
Hpy166II GTNNAC 5 cut(s) 135, 440, 520, 950, 956
Hpy188I TCNGA 3 cut(s) 228, 636, 1024
Hpy188III TCNNGA 2 cut(s) 122, 686
Hpy8I GTNNAC 5 cut(s) 135, 440, 520, 950, 956
HpyCH4III ACNGT 4 cut(s) 181, 671, 695, 710
HpyCH4IV ACGT 7 cut(s) 522, 550, 580, 952, 958, 973, 991
HpyCH4V TGCA 1 cut(s) 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 7 cut(s) 732, 759, 786, 816, 876, 906, 933
HpySE526I ACGT 7 cut(s) 522, 550, 580, 952, 958, 973, 991
Hsp92II CATG 4 cut(s) 267, 314, 533, 689
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 210, 217, 242, 1019
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 2 cut(s) 606, 1033
LweI GCATC 4 cut(s) 40, 637, 667, 712
MabI ACCWGGT 1 cut(s) 442
MaeI CTAG 1 cut(s) 72
MaeII ACGT 7 cut(s) 522, 550, 580, 952, 958, 973, 991
MaeIII GTNAC 5 cut(s) 181, 665, 671, 746, 773
MalI GATC 4 cut(s) 212, 219, 244, 1021
MboI GATC 4 cut(s) 210, 217, 242, 1019
MflI RGATCY 2 cut(s) 210, 242
MhlI GDGCHC 2 cut(s) 88, 380
MluCI AATT 1 cut(s) 381
MlyI GAGTC 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 2 cut(s) 201, 351
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 1046
MspR9I CCNGG 2 cut(s) 444, 1040
MvaI CCWGG 2 cut(s) 444, 1040
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 1 cut(s) 591
NdeII GATC 4 cut(s) 210, 217, 242, 1019
NlaIII CATG 4 cut(s) 267, 314, 533, 689
NlaIV GGNNCC 4 cut(s) 212, 244, 270, 371
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 685
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 3 cut(s) 596, 1045, 1048
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp1406I AACGTT 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 442, 1038
PspGI CCWGG 2 cut(s) 442, 1038
PspN4I GGNNCC 4 cut(s) 212, 244, 270, 371
PsuI RGATCY 2 cut(s) 210, 242
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 201, 351
SatI GCNGC 3 cut(s) 595, 1044, 1047
Sau3AI GATC 4 cut(s) 210, 217, 242, 1019
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 444, 1040
SduI GDGCHC 2 cut(s) 88, 380
SexAI ACCWGGT 1 cut(s) 442
SfaNI GCATC 4 cut(s) 40, 637, 667, 712
SinI GGWCC 9 cut(s) 629, 755, 782, 809, 839, 869, 899, 929, 1028
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 1 cut(s) 381
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 2 cut(s) 35, 768
SspMI CTAG 1 cut(s) 72
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 442, 1038
TaaI ACNGT 4 cut(s) 181, 671, 695, 710
TaiI ACGT 7 cut(s) 525, 553, 583, 955, 961, 976, 994
TasI AATT 1 cut(s) 381
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 201, 351
Tru9I TTAA 2 cut(s) 201, 351
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 594, 1043, 1046
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 212, 438, 546, 702
TspRI CASTG 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 9 cut(s) 629, 755, 782, 809, 839, 869, 899, 929, 1028
XagI CCTNNNNNAGG 1 cut(s) 846
XceI RCATGY 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.