Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

2703837 .. 2705465

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGGAACTATATTACTTACGCCACCACTCTCCTCCAGGAGAAAGGATCTGACGAAATTGTTCTAAAGGCAATGGGCCGAGCTATCAATAAAACGGTTATGATTGCTGAGCTAATAAAGAGAAGGATTCTTGGTCTTCATCAGAATACTTCTATTGGATCGACTGATATAACTGACGTGTACGAGCCCCTAGAAGAAGGCCTGCTTCCTGTTGAGAGTACTCGGCATGTTTCAACGATCACTATTACCTTGTCGAAGAAAGAACTCCTTACATCCTCTTCAGGATATCAATCCCCTCTTCCAGTTGACCAAGTGAAACAGTTGAATGATTTTGAGGACGATGGAGGTGATGTGTTATGTCTTTGTTCATGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

126

Amino Acids

13.8

Weight (kDa)

4.94

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	55, 166
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	182, 220
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	234, 325
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	83, 112
AluI	AGCT	2 cut(s)	83, 112
AlwI	GGATC	2 cut(s)	55, 166
AoxI	GGCC	2 cut(s)	76, 199
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	128
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	1 cut(s)	191
BlpI	GCTNAGC	1 cut(s)	108
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	272
BseJI	GATNNNNATC	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	78, 201
BsnI	GGCC	2 cut(s)	78, 201
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	47, 158, 237
Bsp1720I	GCTNAGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	78, 201
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	2 cut(s)	55, 166
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	47, 158, 237
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	97, 321
Bst6I	CTCTTC	2 cut(s)	283, 303
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	3 cut(s)	50, 161, 240
BstMBI	GATC	3 cut(s)	47, 158, 237
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	78, 201
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	181, 219
CviAII	CATG	2 cut(s)	227, 369
CviJI	RGCY	5 cut(s)	78, 83, 112, 187, 201
CviKI_1	RGCY	5 cut(s)	78, 83, 112, 187, 201
CviQI	GTAC	2 cut(s)	181, 219
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	49, 160, 239
DpnII	GATC	3 cut(s)	47, 158, 237
Eam1104I	CTCTTC	2 cut(s)	283, 303
EarI	CTCTTC	2 cut(s)	283, 303
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	2 cut(s)	230, 372
FaiI	YATR	7 cut(s)	12, 101, 170, 228, 358, 370, 376
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 252, 284
FatI	CATG	2 cut(s)	226, 368
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	78, 201
Hin1II	CATG	2 cut(s)	230, 372
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	181, 307
Hpy188I	TCNGA	2 cut(s)	52, 144
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	2 cut(s)	181, 307
HpyAV	CCTTC	2 cut(s)	117, 191
HpyCH4III	ACNGT	2 cut(s)	97, 321
HpyCH4IV	ACGT	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	230, 372
Kzo9I	GATC	3 cut(s)	47, 158, 237
LpnPI	CCDG	6 cut(s)	23, 50, 215, 222, 267, 315
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	49, 160, 239
MboI	GATC	3 cut(s)	47, 158, 237
MboII	GAAGA	5 cut(s)	128, 206, 268, 270, 290
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	5 cut(s)	44, 286, 306, 328, 338
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	47, 158, 237
NlaIII	CATG	2 cut(s)	230, 372
NmeAIII	GCCGAG	2 cut(s)	104, 202
NspI	RCATGY	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	182, 220
RsaNI	GTAC	2 cut(s)	181, 219
RseI	CAYNNNNRTG	1 cut(s)	373
Sau3AI	GATC	3 cut(s)	47, 158, 237
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	5 cut(s)	85, 114, 180, 251, 349
SmiMI	CAYNNNNRTG	1 cut(s)	373
Sse9I	AATT	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	97, 321
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	161, 254
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	128, 357
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.