Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

42565 .. 45121

Gene Structure 2557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggatcggtatcagaggatagagaagcctcgggaggaaacgcccattaacgagaatgagattcgcattaccactcagggcagaatcaggaactacattacctacgccaccactctcctccaggagaaagggtccaatgaaatatctctcaaagccatgggtagagctatcaacaagactaggagggttgccggccttcatcaaaacacctatattggctctactgatataactgacatgtgggagccactagaagaaggtcttcttcccctggaaactactcgccatgtttcagtgattacagttactttgtccaagaaggaattggacacgtcctctacagggtatcagggacctatcccagctgatcaagtgaaaccatggactgaatatgattatgaaggacgtaaggccacaagttatgatctcactattagggacctcctagtatgcgaggaagaggacgtggtcgaggaaggggtagacgaagaggtaatagacgacgggaattttagtaacggagtgatggtatacaatgctgatggcggtttcgatggtggtcggggctatggtgggtttgatggtggtcgtggctatggtgggtttgaaggtgggcgtggctatggtggcaggggtcagggtcgtggaagagtccgcggttatcgtgggcgtgtgcgaggatatggcagtggaagtatgcaaccagaatccggtggttatactgtttataatgattatggaggtggagctccttctgcacaaggtcgtgggagagagcggggaccaggcagagcaagaggcggtggccgcggtataggtggtagattagatggacctatccagagtgctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

284

Amino Acids

30.91

Weight (kDa)

5.5

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AccBSI	CCGCTC	1 cut(s)	778
AccI	GTMKAC	2 cut(s)	483, 531
AccII	CGCG	2 cut(s)	657, 810
AciI	CCGC	7 cut(s)	546, 655, 657, 778, 801, 808, 810
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	342, 710
AflIII	ACRYGT	2 cut(s)	237, 330
AgsI	TTSAA	1 cut(s)	608
AjiI	CACGTC	2 cut(s)	333, 466
AjnI	CCWGG	3 cut(s)	120, 270, 784
AluBI	AGCT	3 cut(s)	167, 365, 749
AluI	AGCT	3 cut(s)	167, 365, 749
Alw21I	GWGCWC	1 cut(s)	751
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	3 cut(s)	193, 411, 805
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	5 cut(s)	132, 353, 439, 782, 833
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	5 cut(s)	132, 353, 439, 782, 833
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	751
BccI	CCATC	5 cut(s)	520, 536, 548, 575, 824
BciT130I	CCWGG	3 cut(s)	122, 272, 786
BclI	TGATCA	1 cut(s)	367
BfaI	CTAG	3 cut(s)	180, 251, 446
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	808
BlsI	GCNGC	1 cut(s)	809
Bme1390I	CCNGG	3 cut(s)	122, 272, 786
Bme18I	GGWCC	5 cut(s)	132, 353, 439, 782, 833
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	2 cut(s)	333, 466
BmgT120I	GGNCC	5 cut(s)	132, 353, 439, 782, 833
BmiI	GGNNCC	5 cut(s)	133, 246, 354, 440, 783
BmrFI	CCNGG	3 cut(s)	122, 272, 786
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	6 cut(s)	29, 156, 270, 380, 655, 808
BsaWI	WCCGGW	1 cut(s)	710
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 513, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 710
Bse118I	RCCGGY	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	122, 272, 786
BseDI	CCNNGG	6 cut(s)	29, 156, 270, 380, 655, 808
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	342, 710
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	2 cut(s)	657, 810
BshFI	GGCC	3 cut(s)	195, 413, 807
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	192, 711
BslFI	GGGAC	3 cut(s)	366, 452, 795
BslI	CCNNNNNNNGG	2 cut(s)	342, 710
BsmFI	GGGAC	3 cut(s)	366, 452, 795
BsnI	GGCC	3 cut(s)	195, 413, 807
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	4, 367, 424
Bsp19I	CCATGG	2 cut(s)	156, 380
BspACI	CCGC	7 cut(s)	546, 655, 657, 778, 801, 808, 810
BspANI	GGCC	3 cut(s)	195, 413, 807
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	657, 810
BspLI	GGNNCC	5 cut(s)	133, 246, 354, 440, 783
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	6 cut(s)	29, 156, 270, 380, 655, 808
BssMI	GATC	3 cut(s)	4, 367, 424
BssNAI	GTATAC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	156, 380
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	122, 272, 786
Bst4CI	ACNGT	2 cut(s)	304, 724
Bst6I	CTCTTC	3 cut(s)	453, 483, 643
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	4 cut(s)	156, 380, 655, 808
BstFNI	CGCG	2 cut(s)	657, 810
BstKTI	GATC	3 cut(s)	7, 370, 427
BstMBI	GATC	3 cut(s)	4, 367, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	627, 755, 807
BstNI	CCWGG	3 cut(s)	122, 272, 786
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	120, 270, 784
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	2 cut(s)	657, 810
BstV2I	GAAGAC	1 cut(s)	254
BstZ17I	GTATAC	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	195, 413, 807
BtgI	CCRYGG	4 cut(s)	156, 380, 655, 808
BtrI	CACGTC	2 cut(s)	333, 466
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	300, 694
Cac8I	GCNNGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	5 cut(s)	132, 353, 439, 782, 833
Cfr42I	CCGCGG	2 cut(s)	658, 811
CviAII	CATG	4 cut(s)	157, 238, 287, 381
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	6, 369, 426
DpnII	GATC	3 cut(s)	4, 367, 424
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	453, 483, 643
EarI	CTCTTC	3 cut(s)	453, 483, 643
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	156, 380
Eco24I	GRGCYC	1 cut(s)	751
Eco47I	GGWCC	5 cut(s)	132, 353, 439, 782, 833
Eco53kI	GAGCTC	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	749
EcoO109I	RGGNCCY	2 cut(s)	353, 439
EcoRII	CCWGG	3 cut(s)	120, 270, 784
EcoT14I	CCWWGG	2 cut(s)	156, 380
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	156, 380
FaeI	CATG	4 cut(s)	160, 241, 290, 384
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 249, 281
FaqI	GGGAC	3 cut(s)	366, 452, 795
FatI	CATG	4 cut(s)	156, 237, 286, 380
FauI	CCCGC	1 cut(s)	771
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	2 cut(s)	483, 531
Fnu4HI	GCNGC	1 cut(s)	808
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	1 cut(s)	808
FspBI	CTAG	3 cut(s)	180, 251, 446
GluI	GCNGC	1 cut(s)	808
GsaI	CCCAGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	195, 413, 807
HapII	CCGG	2 cut(s)	192, 711
Hin1II	CATG	4 cut(s)	160, 241, 290, 384
HinfI	GANTC	4 cut(s)	61, 84, 651, 707
HpaII	CCGG	2 cut(s)	192, 711
Hpy166II	GTNNAC	2 cut(s)	484, 532
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	32, 88, 841
Hpy8I	GTNNAC	2 cut(s)	484, 532
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	7 cut(s)	206, 251, 313, 395, 470, 602, 762
HpyCH4III	ACNGT	2 cut(s)	304, 724
HpyCH4IV	ACGT	3 cut(s)	332, 406, 465
HpyCH4V	TGCA	2 cut(s)	700, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	627, 755, 807
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	3 cut(s)	332, 406, 465
Hsp92II	CATG	4 cut(s)	160, 241, 290, 384
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	367
KspI	CCGCGG	2 cut(s)	658, 811
Kzo9I	GATC	3 cut(s)	4, 367, 424
LmnI	GCTCC	3 cut(s)	244, 746, 754
MaeI	CTAG	3 cut(s)	180, 251, 446
MaeII	ACGT	3 cut(s)	332, 406, 465
MaeIII	GTNAC	2 cut(s)	304, 515
MalI	GATC	3 cut(s)	6, 369, 426
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	3 cut(s)	4, 367, 424
MboII	GAAGA	6 cut(s)	254, 257, 266, 470, 500, 660
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	2 cut(s)	323, 508
MlyI	GAGTC	1 cut(s)	660
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	3 cut(s)	365, 657, 810
MspI	CCGG	2 cut(s)	192, 711
MspR9I	CCNGG	3 cut(s)	122, 272, 786
MvaI	CCWGG	3 cut(s)	122, 272, 786
MvnI	CGCG	2 cut(s)	657, 810
MwoI	GCNNNNNNNGC	3 cut(s)	627, 755, 807
NaeI	GCCGGC	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	156, 380
NdeII	GATC	3 cut(s)	4, 367, 424
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	4 cut(s)	160, 241, 290, 384
NlaIV	GGNNCC	5 cut(s)	133, 246, 354, 440, 783
NspI	RCATGY	1 cut(s)	241
PciI	ACATGT	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	61, 84, 707
PflFI	GACNNNGTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	809
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	2 cut(s)	353, 439
PscI	ACATGT	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	751
Psp5II	RGGWCCY	2 cut(s)	353, 439
Psp6I	CCWGG	3 cut(s)	120, 270, 784
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	3 cut(s)	120, 270, 784
PspN4I	GGNNCC	5 cut(s)	133, 246, 354, 440, 783
PspPI	GGNCC	5 cut(s)	132, 353, 439, 782, 833
PspPPI	RGGWCCY	2 cut(s)	353, 439
PsyI	GACNNNGTC	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	751
SacII	CCGCGG	2 cut(s)	658, 811
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	808
Sau3AI	GATC	3 cut(s)	4, 367, 424
Sau96I	GGNCC	5 cut(s)	132, 353, 439, 782, 833
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	3 cut(s)	122, 272, 786
SduI	GDGCHC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	339
Sfr303I	CCGCGG	2 cut(s)	658, 811
SgrBI	CCGCGG	2 cut(s)	658, 811
SinI	GGWCC	5 cut(s)	132, 353, 439, 782, 833
Sse9I	AATT	2 cut(s)	323, 508
SsiI	CCGC	7 cut(s)	546, 655, 657, 778, 801, 808, 810
SspMI	CTAG	3 cut(s)	180, 251, 446
SstI	GAGCTC	1 cut(s)	751
StyD4I	CCNGG	3 cut(s)	120, 270, 784
StyI	CCWWGG	2 cut(s)	156, 380
TaaI	ACNGT	2 cut(s)	304, 724
TaiI	ACGT	3 cut(s)	335, 409, 468
TaqI	TCGA	2 cut(s)	471, 552
TasI	AATT	2 cut(s)	323, 508
TauI	GCSGC	1 cut(s)	810
TfiI	GAWTC	3 cut(s)	61, 84, 707
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	300, 694
TspDTI	ATGAA	3 cut(s)	153, 188, 414
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	300, 694
Tth111I	GACNNNGTC	1 cut(s)	467
VpaK11BI	GGWCC	5 cut(s)	132, 353, 439, 782, 833
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmiI	GTMKAC	2 cut(s)	483, 531
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	3 cut(s)	180, 251, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.