Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

3322996 .. 3329451

Gene Structure 6456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G036600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATCGGTATCAGAGGATAGAGAAACCGCGGGAGGAAACGCCAATTAACGAGAATGAGATTCGCATTACCACTCAGGGCAGGATCAGGAACTACATTACCTACGCCACCACTCTGCTTCAGGAGAAAGGATCTGATGAAATTGCTCTCAAAGCCATGGGCAGAGCTATCAACAAGACTGTGATGATTGCTGAACTTATTAAGCGAAGGATTGCTGACCTTCATCAAAACACATATATTGGCTCTACTGATATAACTGACTTGTATGAGCCGCTGGAAGAAGGCCTCGATCCTGTAGAAACTACTCGCCATGTATCAGTGATTACAATTACTTTGTCCAAGAAAGAATTGGATGGATCCTCTACAGGATATCAGGCACCGATTCCAGCAGATCAAGTGAGACCATGGACTGAATATGGTTATGAAGGAGAGGGCTCTCCTAGTATGCGAGGTAGAGGACGCGGTCGAGGAAGGGGTAGAGGCAGAGGGAATGTCAGCAATGGAGTAGTAGAATACAATGGTGATGGTGGCTTTGATGGTGGGCGTGGCTATGGTGGCTTTGATGGCGGGCGCGGCTATGGTGGCAGGGGTCGAGGTCGTGGAAGAATCCGTGGTTATCGTGGACGTGGACGAGGATATGGTGGTGGAAGTATGCAACTGGAATCAGGTGGTTATAATGCTTATAATGATTATGGAGGTGGGGCACCTCCTACACAAGGTCGTGGACGAGGGCGTGGCCGAGGCAGGGCAAGAGGTCGTGGGCGTGGTCAGGGTTTCCGAGTTGATGGACCTCCTACTCCTACCCAGGCTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

273

Amino Acids

29.5

Weight (kDa)

10.01

Isoelectric Point (pI)

18.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	675, 684
AccB1I	GGYRCC	2 cut(s)	376, 703
AccII	CGCG	3 cut(s)	31, 462, 573
AciI	CCGC	6 cut(s)	29, 31, 272, 462, 567, 573
AclWI	GGATC	6 cut(s)	12, 92, 139, 284, 351, 364
AcoI	YGGCCR	1 cut(s)	736
AcuI	CTGAAG	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	716, 745
AjiI	CACGTC	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	6 cut(s)	12, 92, 139, 284, 351, 364
AoxI	GGCC	2 cut(s)	283, 736
ApeKI	GCWGC	2 cut(s)	809, 812
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	706
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	376, 703
BanII	GRGCYC	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	796, 799
BccI	CCATC	5 cut(s)	347, 518, 530, 557, 779
BciT130I	CCWGG	1 cut(s)	806
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	294, 363
BisI	GCNGC	4 cut(s)	272, 574, 810, 813
BlsI	GCNGC	4 cut(s)	273, 575, 811, 814
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	1 cut(s)	788
BmgBI	CACGTC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	3 cut(s)	358, 378, 705
BmrFI	CCNGG	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	6 cut(s)	29, 156, 404, 610, 739, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	716, 745
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	6 cut(s)	29, 156, 404, 610, 739, 804
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	716, 745
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	663
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	796, 799
Bsh1236I	CGCG	3 cut(s)	31, 462, 573
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	285, 738
BshNI	GGYRCC	2 cut(s)	376, 703
BsiEI	CGRYCG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	716, 745
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	285, 738
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	437, 706
Bsp143I	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
Bsp19I	CCATGG	2 cut(s)	156, 404
BspACI	CCGC	6 cut(s)	29, 31, 272, 462, 567, 573
BspANI	GGCC	2 cut(s)	285, 738
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	3 cut(s)	31, 462, 573
BspLI	GGNNCC	3 cut(s)	358, 378, 705
BspPI	GGATC	6 cut(s)	12, 92, 139, 284, 351, 364
BspT107I	GGYRCC	2 cut(s)	376, 703
BspTNI	GGTCTC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	6 cut(s)	29, 156, 404, 610, 739, 804
BssMI	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
BssT1I	CCWWGG	2 cut(s)	156, 404
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	4 cut(s)	29, 156, 404, 610
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	3 cut(s)	31, 462, 573
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	6 cut(s)	7, 87, 134, 292, 359, 394
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 555, 564, 573, 582
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	2 cut(s)	294, 363
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	3 cut(s)	31, 462, 573
BstV1I	GCAGC	2 cut(s)	796, 799
BstX2I	RGATCY	2 cut(s)	131, 356
BstYI	RGATCY	2 cut(s)	131, 356
BsuRI	GGCC	2 cut(s)	285, 738
BtgI	CCRYGG	4 cut(s)	29, 156, 404, 610
BtrI	CACGTC	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	788
Cfr42I	CCGCGG	1 cut(s)	32
CseI	GACGC	1 cut(s)	468
CviAII	CATG	3 cut(s)	157, 311, 405
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	6 cut(s)	6, 86, 133, 291, 358, 393
DpnII	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
EaeI	YGGCCR	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	156, 404
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	156, 404
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	2 cut(s)	156, 404
FaeI	CATG	3 cut(s)	160, 314, 408
FatI	CATG	3 cut(s)	156, 310, 404
FauI	CCCGC	2 cut(s)	24, 560
Fnu4HI	GCNGC	4 cut(s)	272, 574, 810, 813
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	272, 574, 810, 813
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	4 cut(s)	272, 574, 810, 813
HaeIII	GGCC	2 cut(s)	285, 738
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	3 cut(s)	160, 314, 408
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	4 cut(s)	61, 382, 606, 662
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	623, 629, 725
Hpy188I	TCNGA	3 cut(s)	15, 136, 779
Hpy188III	TCNNGA	2 cut(s)	88, 122
Hpy8I	GTNNAC	3 cut(s)	623, 629, 725
HpyAV	CCTTC	5 cut(s)	201, 230, 275, 419, 465
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	1 cut(s)	655
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 555, 564, 573, 582
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	3 cut(s)	160, 314, 408
HspAI	GCGC	1 cut(s)	571
KspI	CCGCGG	1 cut(s)	32
Kzo9I	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
Lsp1109I	GCAGC	2 cut(s)	796, 799
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	625
MalI	GATC	6 cut(s)	6, 86, 133, 291, 358, 393
MboI	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
MboII	GAAGA	2 cut(s)	290, 615
MflI	RGATCY	2 cut(s)	131, 356
MhlI	GDGCHC	2 cut(s)	437, 706
MluCI	AATT	4 cut(s)	45, 141, 327, 347
MseI	TTAA	2 cut(s)	48, 201
MspA1I	CMGCKG	2 cut(s)	31, 274
MspR9I	CCNGG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	3 cut(s)	31, 462, 573
MwoI	GCNNNNNNNGC	5 cut(s)	152, 555, 564, 573, 582
NcoI	CCATGG	2 cut(s)	156, 404
NdeII	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
NlaIII	CATG	3 cut(s)	160, 314, 408
NlaIV	GGNNCC	3 cut(s)	358, 378, 705
NmeAIII	GCCGAG	1 cut(s)	764
PceI	AGGCCT	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	61, 382, 606, 662
PflFI	GACNNNGTC	1 cut(s)	462
PkrI	GCNGC	4 cut(s)	273, 575, 811, 814
PsiI	TTATAA	2 cut(s)	675, 684
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	3 cut(s)	358, 378, 705
PspPI	GGNCC	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	131, 356
PsyI	GACNNNGTC	1 cut(s)	462
SacII	CCGCGG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	48, 201
SatI	GCNGC	4 cut(s)	272, 574, 810, 813
Sau3AI	GATC	6 cut(s)	4, 84, 131, 289, 356, 391
Sau96I	GGNCC	1 cut(s)	788
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	2 cut(s)	437, 706
SfcI	CTRYAG	2 cut(s)	294, 363
Sfr303I	CCGCGG	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	788
Sse9I	AATT	4 cut(s)	45, 141, 327, 347
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	6 cut(s)	29, 31, 272, 462, 567, 573
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	2 cut(s)	156, 404
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	3 cut(s)	288, 466, 592
TasI	AATT	4 cut(s)	45, 141, 327, 347
TauI	GCSGC	2 cut(s)	274, 576
TfiI	GAWTC	4 cut(s)	61, 382, 606, 662
Tru1I	TTAA	2 cut(s)	48, 201
Tru9I	TTAA	2 cut(s)	48, 201
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	809, 812
TspDTI	ATGAA	3 cut(s)	153, 212, 438
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	788
XagI	CCTNNNNNAGG	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.