Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425251.1

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

495 .. 1234

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425251.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgggtagagctatcaacaagactaggagggttgccggccttcatcaaaacacctatattggctctactgatataactgacatgtgggagccactagaagaaggtcttcttcccctggaaactactcgccatgtttcagtgattacagttactttgtccaagaaggaattggacacgtcctctacagggtatcagggacctatcccagctgatcaagtgaaaccatggactgaatatgattatgaaggacgtaaggccacaagttatgatctcactattagggacctcctagtatgcgaggaagaggacgtggtcgaggaaggggtagacgaagaggtaatagacgacggtttaagatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

120

Amino Acids

13.5

Weight (kDa)

4.39

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	2 cut(s)	81, 174
AjiI	CACGTC	2 cut(s)	177, 310
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	11, 209
AluI	AGCT	2 cut(s)	11, 209
AoxI	GGCC	2 cut(s)	37, 255
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	197, 283
AvaII	GGWCC	2 cut(s)	197, 283
BbsI	GAAGAC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	3 cut(s)	24, 95, 290
BfmI	CTRYAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	197, 283
BmgBI	CACGTC	2 cut(s)	177, 310
BmgT120I	GGNCC	2 cut(s)	197, 283
BmiI	GGNNCC	3 cut(s)	90, 198, 284
BmrFI	CCNGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	114, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	114, 224
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	39, 257
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	210, 296
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	210, 296
BsnI	GGCC	2 cut(s)	39, 257
Bsp143I	GATC	3 cut(s)	211, 268, 356
Bsp19I	CCATGG	1 cut(s)	224
BspANI	GGCC	2 cut(s)	39, 257
BspLI	GGNNCC	3 cut(s)	90, 198, 284
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	114, 224
BssMI	GATC	3 cut(s)	211, 268, 356
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	148, 350
Bst6I	CTCTTC	2 cut(s)	297, 327
BstC8I	GCNNGC	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	224
BstKTI	GATC	3 cut(s)	214, 271, 359
BstMBI	GATC	3 cut(s)	211, 268, 356
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	39, 257
BtgI	CCRYGG	1 cut(s)	224
BtrI	CACGTC	2 cut(s)	177, 310
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	197, 283
CviAII	CATG	3 cut(s)	82, 131, 225
CviJI	RGCY	6 cut(s)	11, 39, 63, 91, 209, 257
CviKI_1	RGCY	6 cut(s)	11, 39, 63, 91, 209, 257
DpnI	GATC	3 cut(s)	213, 270, 358
DpnII	GATC	3 cut(s)	211, 268, 356
Eam1104I	CTCTTC	2 cut(s)	297, 327
EarI	CTCTTC	2 cut(s)	297, 327
Eco130I	CCWWGG	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	197, 283
EcoO109I	RGGNCCY	2 cut(s)	197, 283
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	85, 134, 228
FaiI	YATR	9 cut(s)	57, 74, 83, 132, 226, 237, 243, 267, 295
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 93, 125
FaqI	GGGAC	2 cut(s)	210, 296
FatI	CATG	3 cut(s)	81, 130, 224
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	24, 95, 290
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	39, 257
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	3 cut(s)	85, 134, 228
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	360
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	5 cut(s)	50, 95, 157, 239, 314
HpyCH4III	ACNGT	2 cut(s)	148, 350
HpyCH4IV	ACGT	3 cut(s)	176, 250, 309
HpySE526I	ACGT	3 cut(s)	176, 250, 309
Hsp92II	CATG	3 cut(s)	85, 134, 228
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	211, 268, 356
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	49, 101, 128, 171, 179, 219
MaeI	CTAG	3 cut(s)	24, 95, 290
MaeII	ACGT	3 cut(s)	176, 250, 309
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	3 cut(s)	213, 270, 358
MboI	GATC	3 cut(s)	211, 268, 356
MboII	GAAGA	5 cut(s)	98, 101, 110, 314, 344
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	7 cut(s)	21, 190, 292, 296, 298, 310, 328
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
NaeI	GCCGGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	3 cut(s)	211, 268, 356
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	85, 134, 228
NlaIV	GGNNCC	3 cut(s)	90, 198, 284
NspI	RCATGY	1 cut(s)	85
PciI	ACATGT	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	311
PpuMI	RGGWCCY	2 cut(s)	197, 283
PscI	ACATGT	1 cut(s)	81
Psp5II	RGGWCCY	2 cut(s)	197, 283
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	90, 198, 284
PspPI	GGNCC	2 cut(s)	197, 283
PspPPI	RGGWCCY	2 cut(s)	197, 283
PsuI	RGATCY	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	353
Sau3AI	GATC	3 cut(s)	211, 268, 356
Sau96I	GGNCC	2 cut(s)	197, 283
ScrFI	CCNGG	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	197, 283
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	3 cut(s)	24, 95, 290
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	148, 350
TaiI	ACGT	3 cut(s)	179, 253, 312
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	32, 258
TspRI	CASTG	1 cut(s)	144
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	197, 283
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	24, 95, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.