Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

37559520 .. 37565007

Gene Structure 5488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGAATGAGATTCGCATCACCGCTCAAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTTTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCTATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGAGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTATCCAAGGTCGCGGTAAGCTCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

195

Amino Acids

21.25

Weight (kDa)

10.03

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	11 - 52	8.6e-12	Alba
Rpp20	PF12328	11 - 79	1.9e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	570
AciI	CCGC	2 cut(s)	23, 570
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	373
AcuI	CTGAAG	2 cut(s)	278, 567
AfiI	CCNNNNNNNGG	3 cut(s)	292, 361, 563
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	225, 316
AhdI	GACNNNNNGTC	1 cut(s)	37
AjiI	CACGTC	2 cut(s)	169, 368
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	4 cut(s)	74, 256, 402, 577
AluI	AGCT	4 cut(s)	74, 256, 402, 577
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	4 cut(s)	124, 190, 373, 472
ApaLI	GTGCAC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	12, 336
BaeGI	GKGCMC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	556
BccI	CCATC	4 cut(s)	138, 326, 425, 434
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	3 cut(s)	105, 228, 298
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	42, 203, 348
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	524
Bme1390I	CCNGG	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgBI	CACGTC	2 cut(s)	169, 368
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	177, 473
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	11, 41
BsaBI	GATNNNNATC	1 cut(s)	16
BsaJI	CCNNGG	4 cut(s)	180, 355, 376, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 361, 563
Bse3DI	GCAATG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	180, 355, 376, 562
BseGI	GGATG	2 cut(s)	334, 445
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	3 cut(s)	292, 361, 563
BseMI	GCAATG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	126, 192, 375, 474
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	292, 361, 563
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	4 cut(s)	126, 192, 375, 474
Bsp1286I	GDGCHC	2 cut(s)	180, 556
Bsp143I	GATC	4 cut(s)	105, 149, 228, 298
BspACI	CCGC	2 cut(s)	23, 570
BspANI	GGCC	4 cut(s)	126, 192, 375, 474
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	177, 473
BspPI	GGATC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	4 cut(s)	180, 355, 376, 562
BssMI	GATC	4 cut(s)	105, 149, 228, 298
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	334, 445
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	4 cut(s)	108, 152, 231, 301
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	105, 149, 228, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 551
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	556
BstUI	CGCG	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	126, 192, 375, 474
BtrI	CACGTC	2 cut(s)	169, 368
BtsCI	GGATG	2 cut(s)	334, 445
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	472
CviAII	CATG	1 cut(s)	218
DpnI	GATC	4 cut(s)	107, 151, 230, 300
DpnII	GATC	4 cut(s)	105, 149, 228, 298
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	278, 567
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	1 cut(s)	221
FaiI	YATR	7 cut(s)	161, 219, 423, 456, 516, 537, 543
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	1 cut(s)	217
FbaI	TGATCA	3 cut(s)	105, 228, 298
FokI	GGATG	2 cut(s)	341, 452
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	3 cut(s)	42, 203, 348
HaeIII	GGCC	4 cut(s)	126, 192, 375, 474
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	2 cut(s)	12, 351
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	12, 336
Hpy166II	GTNNAC	2 cut(s)	344, 554
Hpy188I	TCNGA	2 cut(s)	135, 356
Hpy188III	TCNNGA	3 cut(s)	109, 203, 232
Hpy8I	GTNNAC	2 cut(s)	344, 554
HpyAV	CCTTC	3 cut(s)	108, 182, 542
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	168, 367
HpyCH4V	TGCA	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 551
HpySE526I	ACGT	2 cut(s)	168, 367
Hsp92II	CATG	1 cut(s)	221
Ksp22I	TGATCA	3 cut(s)	105, 228, 298
Kzo9I	GATC	4 cut(s)	105, 149, 228, 298
LmnI	GCTCC	2 cut(s)	175, 399
LpnPI	CCDG	7 cut(s)	167, 194, 206, 258, 306, 346, 373
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	3 cut(s)	42, 203, 348
MaeII	ACGT	2 cut(s)	168, 367
MalI	GATC	4 cut(s)	107, 151, 230, 300
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	4 cut(s)	105, 149, 228, 298
MboII	GAAGA	3 cut(s)	197, 271, 393
MhlI	GDGCHC	2 cut(s)	180, 556
MluCI	AATT	1 cut(s)	48
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	459, 551
NdeII	GATC	4 cut(s)	105, 149, 228, 298
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	177, 473
NmeAIII	GCCGAG	2 cut(s)	193, 401
NspI	RCATGY	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	12, 351
PsiI	TTATAA	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	177, 473
PspPI	GGNCC	1 cut(s)	472
Sau3AI	GATC	4 cut(s)	105, 149, 228, 298
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	180, 556
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	26, 56
SmoI	CTYRAG	2 cut(s)	26, 56
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	23, 570
SspMI	CTAG	3 cut(s)	42, 203, 348
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	171, 370
TaqI	TCGA	1 cut(s)	502
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	12, 351
VneI	GTGCAC	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	3 cut(s)	42, 203, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.