Rh6BG203100

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002565
Physical Location & Seq
Forward (+)
38324546 .. 38329471
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG203100.1

Sequence Viewer

Length: 681 bp
ATGGGCAGAGCTATCAACAAGACTGTGATGATCACTGAACTTATTAAGAGGAGGGTTGCCGGCCTTCATCAAAACACCTATATTGGCTCTACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGTCCTCTACAGGGTATCAGGGACCTATCCCAGCTGATCAAGTGAAACCATGGACTGAATATGATTATGAAGGACAGGGCCCTCCTAGTATGCGAGGAAGAGGACGTGGTCGAGGAAGGGGTAGACGAAGAGGGAATTTTAGTAACGGAGTGATGGTATACAATGCTGATGGCGGTTTCGATGGTAGTCGGGGCTATGGTGGGTTTGATGGTGGGCGTGGCTATGGTGGGATTGAAGGTGGGCGTGGCTATGGTGGCAGGGGTCAGGATCGTGGAAGAGTCCGCGGTTATCGTGGGCGTGTGCGAGGATATGGCAGTGGAAGTATGCAACCAGAATCCGGTGGTTATACTGTTTATAATGATTATGGAGGTGGAGCTCCTTCTGCACAAGGTCGTGGGAGAGAGCGTGGACCAGGCAGAGCAAGAGGCGGTGGCCGCGGTGTAGGTGGTAGATTAGATGGACCTATCCAGAGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

226

Amino Acids

24.07

Weight (kDa)

10.16

Isoelectric Point (pI)

25.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AccI GTMKAC 2 cut(s) 322, 357
AccII CGCG 2 cut(s) 483, 636
AciI CCGC 6 cut(s) 372, 481, 483, 627, 634, 636
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 210, 536
AflIII ACRYGT 2 cut(s) 105, 198
AgsI TTSAA 1 cut(s) 434
AjiI CACGTC 2 cut(s) 201, 305
AjnI CCWGG 2 cut(s) 138, 610
AluBI AGCT 3 cut(s) 11, 233, 575
AluI AGCT 3 cut(s) 11, 233, 575
Alw21I GWGCWC 1 cut(s) 577
AlwI GGATC 1 cut(s) 474
AoxI GGCC 4 cut(s) 61, 127, 277, 631
ApaI GGGCCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 5 cut(s) 221, 277, 278, 608, 659
AvaII GGWCC 3 cut(s) 221, 608, 659
BaeGI GKGCMC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 281, 577
Bbv12I GWGCWC 1 cut(s) 577
BccI CCATC 5 cut(s) 346, 362, 374, 401, 650
BciT130I CCWGG 2 cut(s) 140, 612
BclI TGATCA 2 cut(s) 30, 235
BfaI CTAG 2 cut(s) 119, 285
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 634
BlsI GCNGC 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 140, 612
Bme18I GGWCC 3 cut(s) 221, 608, 659
BmgBI CACGTC 2 cut(s) 201, 305
BmgT120I GGNCC 5 cut(s) 221, 277, 278, 608, 659
BmiI GGNNCC 3 cut(s) 114, 222, 279
BmrFI CCNGG 2 cut(s) 140, 612
BsaJI CCNNGG 4 cut(s) 138, 248, 481, 634
BsaWI WCCGGW 1 cut(s) 536
BsaXI ACNNNNNCTCC 4 cut(s) 339, 369, 589, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 536
Bse118I RCCGGY 1 cut(s) 59
BseBI CCWGG 2 cut(s) 140, 612
BseDI CCNNGG 4 cut(s) 138, 248, 481, 634
BseLI CCNNNNNNNGG 2 cut(s) 210, 536
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 483, 636
BshFI GGCC 4 cut(s) 63, 129, 279, 633
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 60, 537
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 210, 536
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 4 cut(s) 63, 129, 279, 633
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 281, 577
Bsp143I GATC 3 cut(s) 30, 235, 466
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 6 cut(s) 372, 481, 483, 627, 634, 636
BspANI GGCC 4 cut(s) 63, 129, 279, 633
BspFNI CGCG 2 cut(s) 483, 636
BspLI GGNNCC 3 cut(s) 114, 222, 279
BspPI GGATC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 138, 248, 481, 634
BssMI GATC 3 cut(s) 30, 235, 466
BssNAI GTATAC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 248
Bst1107I GTATAC 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 140, 612
Bst4CI ACNGT 3 cut(s) 25, 172, 550
Bst6I CTCTTC 3 cut(s) 292, 322, 469
BstC8I GCNNGC 1 cut(s) 61
BstDSI CCRYGG 3 cut(s) 248, 481, 634
BstFNI CGCG 2 cut(s) 483, 636
BstKTI GATC 3 cut(s) 33, 238, 469
BstMBI GATC 3 cut(s) 30, 235, 466
BstMWI GCNNNNNNNGC 3 cut(s) 453, 581, 633
BstNI CCWGG 2 cut(s) 140, 612
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 138, 610
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 2 cut(s) 483, 636
BstZ17I GTATAC 1 cut(s) 358
BsuRI GGCC 4 cut(s) 63, 129, 279, 633
BtgI CCRYGG 3 cut(s) 248, 481, 634
BtrI CACGTC 2 cut(s) 201, 305
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 33, 168, 520
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 5 cut(s) 221, 277, 278, 608, 659
Cfr42I CCGCGG 2 cut(s) 484, 637
CviAII CATG 3 cut(s) 106, 155, 249
DpnI GATC 3 cut(s) 32, 237, 468
DpnII GATC 3 cut(s) 30, 235, 466
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 3 cut(s) 292, 322, 469
EarI CTCTTC 3 cut(s) 292, 322, 469
Ecl136II GAGCTC 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 281, 577
Eco47I GGWCC 3 cut(s) 221, 608, 659
Eco53kI GAGCTC 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 3 cut(s) 221, 277, 278
EcoRII CCWGG 2 cut(s) 138, 610
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 2 cut(s) 281, 577
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 109, 158, 252
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 117, 149
FaqI GGGAC 1 cut(s) 234
FatI CATG 3 cut(s) 105, 154, 248
FbaI TGATCA 2 cut(s) 30, 235
FblI GTMKAC 2 cut(s) 322, 357
Fnu4HI GCNGC 1 cut(s) 634
FriOI GRGCYC 2 cut(s) 281, 577
Fsp4HI GCNGC 1 cut(s) 634
FspBI CTAG 2 cut(s) 119, 285
GluI GCNGC 1 cut(s) 634
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 4 cut(s) 63, 129, 279, 633
HapII CCGG 2 cut(s) 60, 537
Hin1II CATG 3 cut(s) 109, 158, 252
HinfI GANTC 2 cut(s) 477, 533
HpaII CCGG 2 cut(s) 60, 537
Hpy166II GTNNAC 3 cut(s) 323, 358, 608
Hpy188III TCNNGA 2 cut(s) 464, 667
Hpy8I GTNNAC 3 cut(s) 323, 358, 608
HpyAV CCTTC 8 cut(s) 74, 119, 140, 181, 263, 309, 428, 588
HpyCH4III ACNGT 3 cut(s) 25, 172, 550
HpyCH4IV ACGT 2 cut(s) 200, 304
HpyCH4V TGCA 2 cut(s) 526, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 453, 581, 633
HpySE526I ACGT 2 cut(s) 200, 304
Hsp92II CATG 3 cut(s) 109, 158, 252
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 30, 235
KspI CCGCGG 2 cut(s) 484, 637
Kzo9I GATC 3 cut(s) 30, 235, 466
LmnI GCTCC 3 cut(s) 112, 572, 580
MaeI CTAG 2 cut(s) 119, 285
MaeII ACGT 2 cut(s) 200, 304
MaeIII GTNAC 2 cut(s) 172, 341
MalI GATC 3 cut(s) 32, 237, 468
MboI GATC 3 cut(s) 30, 235, 466
MboII GAAGA 5 cut(s) 125, 134, 309, 339, 486
MhlI GDGCHC 2 cut(s) 281, 577
MluCI AATT 2 cut(s) 191, 334
MlyI GAGTC 1 cut(s) 486
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 3 cut(s) 233, 483, 636
MspI CCGG 2 cut(s) 60, 537
MspR9I CCNGG 2 cut(s) 140, 612
MvaI CCWGG 2 cut(s) 140, 612
MvnI CGCG 2 cut(s) 483, 636
MwoI GCNNNNNNNGC 3 cut(s) 453, 581, 633
NaeI GCCGGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 248
NdeII GATC 3 cut(s) 30, 235, 466
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 109, 158, 252
NlaIV GGNNCC 3 cut(s) 114, 222, 279
NspI RCATGY 1 cut(s) 109
PceI AGGCCT 1 cut(s) 129
PciI ACATGT 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 635
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 221
PscI ACATGT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 138, 610
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 138, 610
PspN4I GGNNCC 3 cut(s) 114, 222, 279
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 5 cut(s) 221, 277, 278, 608, 659
PspPPI RGGWCCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 577
SacII CCGCGG 2 cut(s) 484, 637
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 634
Sau3AI GATC 3 cut(s) 30, 235, 466
Sau96I GGNCC 5 cut(s) 221, 277, 278, 608, 659
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 2 cut(s) 140, 612
SduI GDGCHC 2 cut(s) 281, 577
SfcI CTRYAG 1 cut(s) 207
Sfr303I CCGCGG 2 cut(s) 484, 637
SgrBI CCGCGG 2 cut(s) 484, 637
SinI GGWCC 3 cut(s) 221, 608, 659
Sse9I AATT 2 cut(s) 191, 334
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 6 cut(s) 372, 481, 483, 627, 634, 636
SspMI CTAG 2 cut(s) 119, 285
SstI GAGCTC 1 cut(s) 577
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 138, 610
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 3 cut(s) 25, 172, 550
TaiI ACGT 2 cut(s) 203, 307
TaqI TCGA 2 cut(s) 310, 378
TasI AATT 2 cut(s) 191, 334
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 40, 168, 520
TspDTI ATGAA 2 cut(s) 56, 282
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 3 cut(s) 40, 168, 520
Tth111I GACNNNGTC 1 cut(s) 306
VpaK11BI GGWCC 3 cut(s) 221, 608, 659
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 2 cut(s) 322, 357
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 119, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.