Rw6G017330

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002565
Physical Location & Seq
Forward (+)
34452137 .. 34454701
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017330.1

Sequence Viewer

Length: 837 bp
ATGGATCGGTATCAGAGGATAGAGAAGCCTCGGGAGGAAACGCCCATTAACGAGAATGAGATTCGCATTACCACTCAGGGCAGAATCAGGAACTACATTATCTACGCCACCACTCTCCTCCAGGAGAAAGGGTCCAATGAAATTTCTCTCAAAGCCATGGGCAGAGCTATCAACAAGACTGTGATGATCACTGAACTCATTAAGAGGAGGGTTGCCGGCCTTCATCAAAACACCTATATTGGCTCTACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGTCCTCTACAGGGTATCAGGGACCTATCCCAGCTGATCAAGTGAAACCATGGACTGAATATGATTATGAAGGACAGGGCCCTCCTAGTATGCGAGGAAGAGGACGTGGTCGAGGAAGGGGTAGACGAAGAGGGAATTTTAGTAACGGAGTGATGGTATACAATGCTGATGGCGGTTTCAATGGTGGTCGGGGCTATGGTGGGTTTGATGGTGGTCGTGGCTATGGTGGGTTTGAAGGTGGGCGTGGCTATGGTGGCAGGGGTCAGGGTCGTGGAAGAGTCCGCGGTTATCGTGGGCGTGTGCGAGGATATGGCAGTGGAAGTATGCAACCAGAATCCGGTGGTTATACTGTTTATAATGATTATGGAGGTGGAGCTCCTTCTGCACAAGGTCGTGGGAGAGAGCGTGGACCAGGCAGAGCAAGAGGCGGTGGCCGCGGTGTAGGTGGTAGATTAGATGGACCTATCCAGAGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

278

Amino Acids

30.19

Weight (kDa)

10.11

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 8.6e-17 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccI GTMKAC 2 cut(s) 478, 513
AccII CGCG 2 cut(s) 639, 792
AciI CCGC 6 cut(s) 528, 637, 639, 783, 790, 792
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 2 cut(s) 141, 490
AfiI CCNNNNNNNGG 2 cut(s) 366, 692
AflIII ACRYGT 2 cut(s) 261, 354
AgsI TTSAA 2 cut(s) 535, 590
AjiI CACGTC 2 cut(s) 357, 461
AjnI CCWGG 3 cut(s) 120, 294, 766
AluBI AGCT 3 cut(s) 167, 389, 731
AluI AGCT 3 cut(s) 167, 389, 731
Alw21I GWGCWC 1 cut(s) 733
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 4 cut(s) 217, 283, 433, 787
ApaI GGGCCC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 141, 490
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 6 cut(s) 132, 377, 433, 434, 764, 815
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 4 cut(s) 132, 377, 764, 815
BaeGI GKGCMC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 437, 733
Bbv12I GWGCWC 1 cut(s) 733
BccI CCATC 4 cut(s) 502, 518, 557, 806
BciT130I CCWGG 3 cut(s) 122, 296, 768
BclI TGATCA 2 cut(s) 186, 391
BfaI CTAG 2 cut(s) 275, 441
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 790
BlsI GCNGC 1 cut(s) 791
Bme1390I CCNGG 3 cut(s) 122, 296, 768
Bme18I GGWCC 4 cut(s) 132, 377, 764, 815
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 2 cut(s) 357, 461
BmgT120I GGNCC 6 cut(s) 132, 377, 433, 434, 764, 815
BmiI GGNNCC 4 cut(s) 133, 270, 378, 435
BmrFI CCNGG 3 cut(s) 122, 296, 768
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 790
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 495, 525, 745, 775
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 692
Bse118I RCCGGY 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 122, 296, 768
BseDI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 790
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 366, 692
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 107, 220
BseSI GKGCMC 1 cut(s) 437
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 2 cut(s) 639, 792
BshFI GGCC 4 cut(s) 219, 285, 435, 789
BsiHKAI GWGCWC 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 216, 693
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 366, 692
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 4 cut(s) 219, 285, 435, 789
BsoBI CYCGRG 1 cut(s) 30
Bsp120I GGGCCC 1 cut(s) 433
Bsp1286I GDGCHC 2 cut(s) 437, 733
Bsp143I GATC 3 cut(s) 4, 186, 391
Bsp19I CCATGG 2 cut(s) 156, 404
BspACI CCGC 6 cut(s) 528, 637, 639, 783, 790, 792
BspANI GGCC 4 cut(s) 219, 285, 435, 789
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 2 cut(s) 639, 792
BspLI GGNNCC 4 cut(s) 133, 270, 378, 435
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 790
BssMI GATC 3 cut(s) 4, 186, 391
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 2 cut(s) 156, 404
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 3 cut(s) 122, 296, 768
Bst4CI ACNGT 3 cut(s) 181, 328, 706
Bst6I CTCTTC 3 cut(s) 448, 478, 625
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 4 cut(s) 156, 404, 637, 790
BstFNI CGCG 2 cut(s) 639, 792
BstKTI GATC 3 cut(s) 7, 189, 394
BstMBI GATC 3 cut(s) 4, 186, 391
BstMWI GCNNNNNNNGC 3 cut(s) 609, 737, 789
BstNI CCWGG 3 cut(s) 122, 296, 768
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 120, 294, 766
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 2 cut(s) 639, 792
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 4 cut(s) 219, 285, 435, 789
BtgI CCRYGG 4 cut(s) 156, 404, 637, 790
BtrI CACGTC 2 cut(s) 357, 461
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 3 cut(s) 189, 324, 676
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 6 cut(s) 132, 377, 433, 434, 764, 815
Cfr42I CCGCGG 2 cut(s) 640, 793
CviAII CATG 4 cut(s) 157, 262, 311, 405
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 6, 188, 393
DpnII GATC 3 cut(s) 4, 186, 391
EaeI YGGCCR 1 cut(s) 787
Eam1104I CTCTTC 3 cut(s) 448, 478, 625
EarI CTCTTC 3 cut(s) 448, 478, 625
Ecl136II GAGCTC 1 cut(s) 731
Eco130I CCWWGG 2 cut(s) 156, 404
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 437, 733
Eco47I GGWCC 4 cut(s) 132, 377, 764, 815
Eco53kI GAGCTC 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 731
EcoO109I RGGNCCY 3 cut(s) 377, 433, 434
EcoRII CCWGG 3 cut(s) 120, 294, 766
EcoT14I CCWWGG 2 cut(s) 156, 404
EcoT38I GRGCYC 2 cut(s) 437, 733
ErhI CCWWGG 2 cut(s) 156, 404
FaeI CATG 4 cut(s) 160, 265, 314, 408
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 273, 305
FaqI GGGAC 1 cut(s) 390
FatI CATG 4 cut(s) 156, 261, 310, 404
FbaI TGATCA 2 cut(s) 186, 391
FblI GTMKAC 2 cut(s) 478, 513
Fnu4HI GCNGC 1 cut(s) 790
FriOI GRGCYC 2 cut(s) 437, 733
Fsp4HI GCNGC 1 cut(s) 790
FspBI CTAG 2 cut(s) 275, 441
GluI GCNGC 1 cut(s) 790
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 4 cut(s) 219, 285, 435, 789
HapII CCGG 2 cut(s) 216, 693
Hin1II CATG 4 cut(s) 160, 265, 314, 408
HinfI GANTC 4 cut(s) 61, 84, 633, 689
HpaII CCGG 2 cut(s) 216, 693
Hpy166II GTNNAC 3 cut(s) 479, 514, 764
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 32, 88, 823
Hpy8I GTNNAC 3 cut(s) 479, 514, 764
HpyAV CCTTC 8 cut(s) 230, 275, 296, 337, 419, 465, 584, 744
HpyCH4III ACNGT 3 cut(s) 181, 328, 706
HpyCH4IV ACGT 2 cut(s) 356, 460
HpyCH4V TGCA 2 cut(s) 682, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 609, 737, 789
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 356, 460
Hsp92II CATG 4 cut(s) 160, 265, 314, 408
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 2 cut(s) 186, 391
KspI CCGCGG 2 cut(s) 640, 793
Kzo9I GATC 3 cut(s) 4, 186, 391
LmnI GCTCC 3 cut(s) 268, 728, 736
MaeI CTAG 2 cut(s) 275, 441
MaeII ACGT 2 cut(s) 356, 460
MaeIII GTNAC 2 cut(s) 328, 497
MalI GATC 3 cut(s) 6, 188, 393
MboI GATC 3 cut(s) 4, 186, 391
MboII GAAGA 5 cut(s) 281, 290, 465, 495, 642
MhlI GDGCHC 2 cut(s) 437, 733
MluCI AATT 3 cut(s) 141, 347, 490
MlyI GAGTC 1 cut(s) 642
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 2 cut(s) 48, 201
MspA1I CMGCKG 3 cut(s) 389, 639, 792
MspI CCGG 2 cut(s) 216, 693
MspR9I CCNGG 3 cut(s) 122, 296, 768
MvaI CCWGG 3 cut(s) 122, 296, 768
MvnI CGCG 2 cut(s) 639, 792
MwoI GCNNNNNNNGC 3 cut(s) 609, 737, 789
NaeI GCCGGC 1 cut(s) 217
NcoI CCATGG 2 cut(s) 156, 404
NdeII GATC 3 cut(s) 4, 186, 391
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 4 cut(s) 160, 265, 314, 408
NlaIV GGNNCC 4 cut(s) 133, 270, 378, 435
NspI RCATGY 1 cut(s) 265
PceI AGGCCT 1 cut(s) 285
PciI ACATGT 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 61, 84, 689
PflFI GACNNNGTC 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 1 cut(s) 791
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PpuMI RGGWCCY 1 cut(s) 377
PscI ACATGT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 733
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 3 cut(s) 120, 294, 766
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 120, 294, 766
PspN4I GGNNCC 4 cut(s) 133, 270, 378, 435
PspOMI GGGCCC 1 cut(s) 433
PspPI GGNCC 6 cut(s) 132, 377, 433, 434, 764, 815
PspPPI RGGWCCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 733
SacII CCGCGG 2 cut(s) 640, 793
SaqAI TTAA 2 cut(s) 48, 201
SatI GCNGC 1 cut(s) 790
Sau3AI GATC 3 cut(s) 4, 186, 391
Sau96I GGNCC 6 cut(s) 132, 377, 433, 434, 764, 815
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 3 cut(s) 122, 296, 768
SduI GDGCHC 2 cut(s) 437, 733
SfcI CTRYAG 1 cut(s) 363
Sfr303I CCGCGG 2 cut(s) 640, 793
SgrBI CCGCGG 2 cut(s) 640, 793
SinI GGWCC 4 cut(s) 132, 377, 764, 815
Sse9I AATT 3 cut(s) 141, 347, 490
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 6 cut(s) 528, 637, 639, 783, 790, 792
SspMI CTAG 2 cut(s) 275, 441
SstI GAGCTC 1 cut(s) 733
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 120, 294, 766
StyI CCWWGG 2 cut(s) 156, 404
TaaI ACNGT 3 cut(s) 181, 328, 706
TaiI ACGT 2 cut(s) 359, 463
TaqI TCGA 1 cut(s) 466
TasI AATT 3 cut(s) 141, 347, 490
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 3 cut(s) 61, 84, 689
Tru1I TTAA 2 cut(s) 48, 201
Tru9I TTAA 2 cut(s) 48, 201
TscAI CASTG 3 cut(s) 196, 324, 676
TspDTI ATGAA 3 cut(s) 153, 212, 438
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 196, 324, 676
Tth111I GACNNNGTC 1 cut(s) 462
VpaK11BI GGWCC 4 cut(s) 132, 377, 764, 815
XapI RAATTY 2 cut(s) 141, 490
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 2 cut(s) 478, 513
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 275, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.