Rh6CG203300

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002565
Physical Location & Seq
Forward (+)
34039177 .. 34042542
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG203300.1

Sequence Viewer

Length: 807 bp
ATGCATTATGTGCTACATTTTCATTGCCGAATGAACATCAGCTTTGTTGTATCACATAACCTATATGACCTAATTTGTGTCCATTATGTACAGGAGAAAGGGTCCAATGAAATATCTCTCAAAGCCATGGGTAGAGCTATCAACAAGACTGTGATGATCACTGAACTTATTAAGAGGAGGGTTGCCGGCCTTCATCAAAACACCTATATTGGCTCTACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGTCCTCTACAGGGTATCAGGGACCTATCCCAGCTGATCAAGTGAAACCATGGACTGAATATGATTATGAAGGACAGGGACCTCCTAGTAGGCGAGGAAGAGGACGTGGTCGAGGAAGGGGTAGAGGAAGAGGGAATTTTAGTAACGGAGTGATGGTATACAATGCTGATGGCGGTTTCAATGGTGGTCGGGGCTATGGTGGGTTTGATGGTGGTCGTGACTATGGTGGGTTTGAAGGTGGGCGTGGCTATGGTGGCAGGGGTCAGGGTCGTGGAAGAGTCCGCGGTTATCGTGGGCGTGTGCGAGGATATGGCAGTGGAAGTATGCAACCAGAATCCGGTGGTTATACTGTTTATAATGATTATGGAGGTGGAGCTCCTTCTGCACAAGGTTGTGGGAGAGAGCGTGGACCAGGCAGAGCAAGAGGCGGTGGCCGCGGTGTAGGTGGTAGATTAGATGGACCTATCCAGAGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

268

Amino Acids

28.9

Weight (kDa)

9.75

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 25 - 73 1.7e-10 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AccI GTMKAC 1 cut(s) 483
AccII CGCG 2 cut(s) 609, 762
AciI CCGC 6 cut(s) 498, 607, 609, 753, 760, 762
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 336, 662
AflIII ACRYGT 2 cut(s) 231, 324
AgsI TTSAA 2 cut(s) 505, 560
AjiI CACGTC 2 cut(s) 327, 431
AjnI CCWGG 2 cut(s) 264, 736
AluBI AGCT 4 cut(s) 42, 137, 359, 701
AluI AGCT 4 cut(s) 42, 137, 359, 701
Alw21I GWGCWC 1 cut(s) 703
AoxI GGCC 3 cut(s) 187, 253, 757
ApoI RAATTY 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 5 cut(s) 102, 347, 404, 734, 785
AvaII GGWCC 5 cut(s) 102, 347, 404, 734, 785
BanII GRGCYC 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 703
BccI CCATC 4 cut(s) 472, 488, 527, 776
BciT130I CCWGG 2 cut(s) 266, 738
BclI TGATCA 2 cut(s) 156, 361
BfaI CTAG 2 cut(s) 245, 411
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 1 cut(s) 760
BlsI GCNGC 1 cut(s) 761
Bme1390I CCNGG 2 cut(s) 266, 738
Bme18I GGWCC 5 cut(s) 102, 347, 404, 734, 785
BmgBI CACGTC 2 cut(s) 327, 431
BmgT120I GGNCC 5 cut(s) 102, 347, 404, 734, 785
BmiI GGNNCC 4 cut(s) 103, 240, 348, 405
BmrFI CCNGG 2 cut(s) 266, 738
BsaJI CCNNGG 5 cut(s) 126, 264, 374, 607, 760
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 6 cut(s) 86, 116, 465, 495, 715, 745
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 662
Bse118I RCCGGY 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 2 cut(s) 266, 738
BseDI CCNNGG 5 cut(s) 126, 264, 374, 607, 760
BseLI CCNNNNNNNGG 2 cut(s) 336, 662
BseMI GCAATG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 2 cut(s) 609, 762
BshFI GGCC 3 cut(s) 189, 255, 759
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 2 cut(s) 186, 663
BslFI GGGAC 2 cut(s) 360, 417
BslI CCNNNNNNNGG 2 cut(s) 336, 662
BsmFI GGGAC 2 cut(s) 360, 417
BsnI GGCC 3 cut(s) 189, 255, 759
Bsp1286I GDGCHC 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 156, 361
Bsp19I CCATGG 2 cut(s) 126, 374
BspACI CCGC 6 cut(s) 498, 607, 609, 753, 760, 762
BspANI GGCC 3 cut(s) 189, 255, 759
BspFNI CGCG 2 cut(s) 609, 762
BspLI GGNNCC 4 cut(s) 103, 240, 348, 405
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 5 cut(s) 126, 264, 374, 607, 760
BssMI GATC 2 cut(s) 156, 361
BssNAI GTATAC 1 cut(s) 484
BssT1I CCWWGG 2 cut(s) 126, 374
Bst1107I GTATAC 1 cut(s) 484
Bst2UI CCWGG 2 cut(s) 266, 738
Bst4CI ACNGT 3 cut(s) 151, 298, 676
Bst6I CTCTTC 3 cut(s) 418, 448, 595
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 187
BstDSI CCRYGG 4 cut(s) 126, 374, 607, 760
BstFNI CGCG 2 cut(s) 609, 762
BstKTI GATC 2 cut(s) 159, 364
BstMBI GATC 2 cut(s) 156, 361
BstMWI GCNNNNNNNGC 4 cut(s) 10, 579, 707, 759
BstNI CCWGG 2 cut(s) 266, 738
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 264, 736
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 2 cut(s) 609, 762
BstZ17I GTATAC 1 cut(s) 484
BsuRI GGCC 3 cut(s) 189, 255, 759
BtgI CCRYGG 4 cut(s) 126, 374, 607, 760
BtrI CACGTC 2 cut(s) 327, 431
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 3 cut(s) 159, 294, 646
Cac8I GCNNGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 5 cut(s) 102, 347, 404, 734, 785
Cfr42I CCGCGG 2 cut(s) 610, 763
Csp6I GTAC 1 cut(s) 89
CviAII CATG 4 cut(s) 127, 232, 281, 375
CviQI GTAC 1 cut(s) 89
DpnI GATC 2 cut(s) 158, 363
DpnII GATC 2 cut(s) 156, 361
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 418, 448, 595
EarI CTCTTC 3 cut(s) 418, 448, 595
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 126, 374
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 5 cut(s) 102, 347, 404, 734, 785
Eco53kI GAGCTC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 347, 404
EcoRII CCWGG 2 cut(s) 264, 736
EcoT14I CCWWGG 2 cut(s) 126, 374
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 126, 374
FaeI CATG 4 cut(s) 130, 235, 284, 378
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 243, 275
FaqI GGGAC 2 cut(s) 360, 417
FatI CATG 4 cut(s) 126, 231, 280, 374
FbaI TGATCA 2 cut(s) 156, 361
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 760
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 1 cut(s) 760
FspBI CTAG 2 cut(s) 245, 411
GluI GCNGC 1 cut(s) 760
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 3 cut(s) 189, 255, 759
HapII CCGG 2 cut(s) 186, 663
Hin1II CATG 4 cut(s) 130, 235, 284, 378
HinfI GANTC 2 cut(s) 603, 659
HpaII CCGG 2 cut(s) 186, 663
Hpy166II GTNNAC 2 cut(s) 484, 734
Hpy188III TCNNGA 2 cut(s) 542, 793
Hpy8I GTNNAC 2 cut(s) 484, 734
HpyAV CCTTC 8 cut(s) 200, 245, 266, 307, 389, 435, 554, 714
HpyCH4III ACNGT 3 cut(s) 151, 298, 676
HpyCH4IV ACGT 2 cut(s) 326, 430
HpyCH4V TGCA 3 cut(s) 4, 652, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 579, 707, 759
HpySE526I ACGT 2 cut(s) 326, 430
Hsp92II CATG 4 cut(s) 130, 235, 284, 378
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 2 cut(s) 156, 361
KspI CCGCGG 2 cut(s) 610, 763
Kzo9I GATC 2 cut(s) 156, 361
LmnI GCTCC 3 cut(s) 238, 698, 706
MaeI CTAG 2 cut(s) 245, 411
MaeII ACGT 2 cut(s) 326, 430
MaeIII GTNAC 3 cut(s) 298, 467, 542
MalI GATC 2 cut(s) 158, 363
MboI GATC 2 cut(s) 156, 361
MboII GAAGA 5 cut(s) 251, 260, 435, 465, 612
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 3 cut(s) 72, 317, 460
MlyI GAGTC 1 cut(s) 612
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 3 cut(s) 359, 609, 762
MspI CCGG 2 cut(s) 186, 663
MspR9I CCNGG 2 cut(s) 266, 738
MvaI CCWGG 2 cut(s) 266, 738
MvnI CGCG 2 cut(s) 609, 762
MwoI GCNNNNNNNGC 4 cut(s) 10, 579, 707, 759
NaeI GCCGGC 1 cut(s) 187
NcoI CCATGG 2 cut(s) 126, 374
NdeII GATC 2 cut(s) 156, 361
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 130, 235, 284, 378
NlaIV GGNNCC 4 cut(s) 103, 240, 348, 405
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 235
PceI AGGCCT 1 cut(s) 255
PciI ACATGT 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 659
PflFI GACNNNGTC 1 cut(s) 432
PkrI GCNGC 1 cut(s) 761
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 2 cut(s) 347, 404
PscI ACATGT 1 cut(s) 231
PsiI TTATAA 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 703
Psp5II RGGWCCY 2 cut(s) 347, 404
Psp6I CCWGG 2 cut(s) 264, 736
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 264, 736
PspN4I GGNNCC 4 cut(s) 103, 240, 348, 405
PspPI GGNCC 5 cut(s) 102, 347, 404, 734, 785
PspPPI RGGWCCY 2 cut(s) 347, 404
PsyI GACNNNGTC 1 cut(s) 432
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SacI GAGCTC 1 cut(s) 703
SacII CCGCGG 2 cut(s) 610, 763
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 760
Sau3AI GATC 2 cut(s) 156, 361
Sau96I GGNCC 5 cut(s) 102, 347, 404, 734, 785
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 2 cut(s) 266, 738
SduI GDGCHC 1 cut(s) 703
SfcI CTRYAG 1 cut(s) 333
Sfr303I CCGCGG 2 cut(s) 610, 763
SgrBI CCGCGG 2 cut(s) 610, 763
SinI GGWCC 5 cut(s) 102, 347, 404, 734, 785
Sse9I AATT 3 cut(s) 72, 317, 460
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 6 cut(s) 498, 607, 609, 753, 760, 762
SspMI CTAG 2 cut(s) 245, 411
SstI GAGCTC 1 cut(s) 703
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 264, 736
StyI CCWWGG 2 cut(s) 126, 374
TaaI ACNGT 3 cut(s) 151, 298, 676
TaiI ACGT 2 cut(s) 329, 433
TaqI TCGA 1 cut(s) 436
TasI AATT 3 cut(s) 72, 317, 460
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 166, 294, 646
TseFI GTSAC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 5 cut(s) 11, 47, 123, 182, 408
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 3 cut(s) 166, 294, 646
Tth111I GACNNNGTC 1 cut(s) 432
VpaK11BI GGWCC 5 cut(s) 102, 347, 404, 734, 785
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 245, 411
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.