Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Forward (+)

14963011 .. 14966929

Gene Structure 3919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G161100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATAAGTTCCAGAGGGTGGAGAAGCCCAAGACGGAGGCTGCGCCTATAAACGAGAATGAGATTCGCATAACCGCTCAAGGCAGAATGAGGAACTATATTACTTACGCCACCACTCTCCTTCAGGAGAAAGGGTCTGATGAAATTATTCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTAATAAAGAGAAGGATTGCTGGTCTCCATCAGAATACTTCTATTGGATCAACTGATATTACTGACGTGTATGAGCCCCTGGAAGAAGGCCTGGATCGTGTAGAGAGTACTCGGCATGTTTCAATGATCACTATTACTTTGTCGAAGACGGAGCTTCATACATCCTCTACAGGATACCAACCCCCTCTTCCGGCTGACCAAGTGAAGCCATTGAATGATTTTGAGGATAATGGAGAGGGTTCACCTAGATTCCGAGGCAGGAGTCGTGGTGGCCGAGGACGAGCTAGGGATAGAGGAAACTACAATGGAGTTGGGGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGTTATGGTGGCAGAGGTAGAGGCCGTGGAAGAGGTGGTTCTTTTAGGGGACGAGGAAGAGGTTATGGTCAGTCGGGTGGATACTATGACTATGTTGACGGTGCACCTGCCCAAGGTCGCGGTCTCGCAGGGCGTGGTCGAGGCAGAGGAAGAGGCCGTGGTCGTGGTCGTAATACCAGATTGGAAGGACAAGCACCCGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

251

Amino Acids

27.26

Weight (kDa)

10.22

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	77
AccII	CGCG	1 cut(s)	666
AciI	CCGC	3 cut(s)	75, 666, 744
AclWI	GGATC	2 cut(s)	253, 300
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	19, 388, 659
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	321, 412
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	276, 288
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	170, 352, 482
AluI	AGCT	3 cut(s)	170, 352, 482
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	227, 674
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	2 cut(s)	253, 300
AoxI	GGCC	4 cut(s)	286, 469, 568, 700
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	2 cut(s)	41, 746
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	2 cut(s)	28, 733
BccI	CCATC	3 cut(s)	234, 521, 530
BceAI	ACGGC	2 cut(s)	555, 687
BciT130I	CCWGG	2 cut(s)	278, 290
BciVI	GTATCC	2 cut(s)	365, 620
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	227, 674
BfaI	CTAG	2 cut(s)	444, 483
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	2 cut(s)	365, 620
BisI	GCNGC	2 cut(s)	42, 747
BlsI	GCNGC	2 cut(s)	43, 748
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	278, 290
BmgBI	CACGTC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	278, 290
BpiI	GAAGAC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	63, 137
BsaI	GGTCTC	2 cut(s)	227, 674
BsaJI	CCNNGG	6 cut(s)	276, 451, 472, 571, 658, 703
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 388, 659
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	278, 290
BseDI	CCNNGG	6 cut(s)	276, 451, 472, 571, 658, 703
BseGI	GGATG	2 cut(s)	359, 541
BseLI	CCNNNNNNNGG	3 cut(s)	19, 388, 659
BseMI	GCAATG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	2 cut(s)	28, 733
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	4 cut(s)	288, 471, 570, 702
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	19, 388, 659
BsmAI	GTCTC	2 cut(s)	227, 674
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	4 cut(s)	288, 471, 570, 702
Bso31I	GGTCTC	2 cut(s)	227, 674
Bsp1286I	GDGCHC	2 cut(s)	276, 652
Bsp143I	GATC	3 cut(s)	245, 292, 324
BspACI	CCGC	3 cut(s)	75, 666, 744
BspANI	GGCC	4 cut(s)	288, 471, 570, 702
BspFNI	CGCG	1 cut(s)	666
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	253, 300
BspTNI	GGTCTC	2 cut(s)	227, 674
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	6 cut(s)	276, 451, 472, 571, 658, 703
BssMI	GATC	3 cut(s)	245, 292, 324
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	278, 290
Bst4CI	ACNGT	2 cut(s)	184, 647
Bst6I	CTCTTC	4 cut(s)	390, 571, 598, 691
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstDSI	CCRYGG	2 cut(s)	571, 703
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	359, 541
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	248, 295, 327
BstMAI	GTCTC	2 cut(s)	227, 674
BstMBI	GATC	3 cut(s)	245, 292, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	2 cut(s)	278, 290
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	276, 288
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	28, 733
BstV2I	GAAGAC	1 cut(s)	350
BsuI	GTATCC	2 cut(s)	365, 620
BsuRI	GGCC	4 cut(s)	288, 471, 570, 702
BtgI	CCRYGG	2 cut(s)	571, 703
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	359, 541
BveI	ACCTGC	1 cut(s)	661
CfoI	GCGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	3 cut(s)	247, 294, 326
DpnII	GATC	3 cut(s)	245, 292, 324
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	4 cut(s)	390, 571, 598, 691
EarI	CTCTTC	4 cut(s)	390, 571, 598, 691
Eco130I	CCWWGG	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	227, 674
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	276, 288
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	1 cut(s)	317
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	42, 747
FokI	GGATG	2 cut(s)	346, 548
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	42, 747
FspBI	CTAG	2 cut(s)	444, 483
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	42, 747
HaeIII	GGCC	4 cut(s)	288, 471, 570, 702
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	64, 447, 460
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	440, 643, 650
Hpy188I	TCNGA	3 cut(s)	139, 231, 452
Hpy188III	TCNNGA	2 cut(s)	13, 125
Hpy8I	GTNNAC	3 cut(s)	440, 643, 650
HpyAV	CCTTC	4 cut(s)	131, 204, 278, 725
HpyCH4III	ACNGT	2 cut(s)	184, 647
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	245, 292, 324
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	28, 733
MaeI	CTAG	2 cut(s)	444, 483
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	247, 294, 326
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	3 cut(s)	245, 292, 324
MboII	GAAGA	6 cut(s)	293, 355, 377, 588, 615, 708
MhlI	GDGCHC	2 cut(s)	276, 652
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	278, 290
MvaI	CCWGG	2 cut(s)	278, 290
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	746
NdeII	GATC	3 cut(s)	245, 292, 324
NlaIII	CATG	1 cut(s)	317
NmeAIII	GCCGAG	2 cut(s)	289, 497
NspI	RCATGY	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	64, 447
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	43, 748
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	276, 288
PspGI	CCWGG	2 cut(s)	276, 288
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SatI	GCNGC	2 cut(s)	42, 747
Sau3AI	GATC	3 cut(s)	245, 292, 324
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	278, 290
SduI	GDGCHC	2 cut(s)	276, 652
SfcI	CTRYAG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	78, 152
SmoI	CTYRAG	2 cut(s)	78, 152
Sse9I	AATT	1 cut(s)	144
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	75, 666, 744
SspMI	CTAG	2 cut(s)	444, 483
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	276, 288
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	2 cut(s)	184, 647
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	341, 685
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	64, 447
TseI	GCWGC	2 cut(s)	41, 746
TspDTI	ATGAA	2 cut(s)	156, 344
TspGWI	ACGGA	2 cut(s)	50, 362
Van91I	CCANNNNNTGG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	657
XceI	RCATGY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	2 cut(s)	444, 483
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.