Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

11070193 .. 11071443

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0083400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGACTGTGGCTACAGTCTCTCCAATTTTACACAATATCGATAGCCTTGTTGGGTTTCTTAAAAAAGGAAGACGATTGGAATCTGATCATAGTGACATAGGATTGACAGAGAGGACAAAAAGGCGCAAGATAGAAACTAATCTGGATGTTTCAGAAGAAGCAAGATTTGCAGATGAAGAGAAGTCCAGGTCTTCTGGAATGAGATTTGGGTACTTACACAGGTGCTTAGGGCTTAATGATGATGAAATTGATCGTTTACGCAACGAAAACACTCAAAACTTATTGTTGAACTATAAGAAACTTCATTTGGTACTTGATCTAGACCACACCCTGCTCAATTCAACTTTCCTAGATAATATGTCACCAGATGAAGAATATTTGAAGACTCAAACCCAATATGATCATTCCCTGCAACATGTTCACATTGTGGATACTCCCAGCATGCGACTGATGACAAAGTTCAGACCATATATTAGGACATTTTTAATGGAAGCCAGTCAAATGTTTGAGCTGTCCATATACACAATGGGTAATCGAGACTATGCTCTTGAAATGGCTAAGCTGCTTGATCCTGCAGGAAATCAAATCTTTGGTGGTAGAGTCATATCACGTAGTGATAGCACAGAAACAGATCGAAAGGGTCTAGATGTCCTGCTTGCCCGAGATTCTGCTGTTTTAATCCTTGATGATACAAAAGATGTGTGGACAAATATCAACCAGGACAATGTAATAGTAATGCCCAGATACCATTTCTTTAAATCTAGTTGTCAACAATATGGCATCAGTAATAGTAAGCCTTATTCCGAGTTGAAGACCGACGAATGTGATCGGTATGGAGGAGCTTATCTTGCAAATGTACTTCAACTTCTTAGACATATCCACACCATCTTCTTTAATGAAGTCGAGATAGAGGGGTGGGATCTTATCGACAGAGATGTGAGGCTCGTCTTAAAAATCCTTCAGAAGGAAGTCTTGAAGGGTTGTAAAATTGTTTTCAGCCATGTATTCCCTTCAAATGTCAAGGCTGATACTCAACCTTTGTGGAAGATGGCGGAGCAGTTGGGAGCTACTTGTTCGACACAAGTTGATCCATCAGTCACACACGTGGTTGCAGCAGATGCTCGAACACAGAAATCTTGTTGGGCAGTAAAAGCAGGCAAGTTTTTGGTGAATCCACAGTGGATCCATACTGCAAATTTTATGTGGCAAAAGCAACCTGAAGAAAATTTCCCCTGCCATTACCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

416

Amino Acids

48.01

Weight (kDa)

6.25

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	102 - 250	1.7e-22	NLI interacting factor-like phosphatase
BRCT	PF00533	323 - 395	4.9e-09	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	343 - 394	6.1e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1052
AclWI	GGATC	5 cut(s)	563, 927, 1082, 1177, 1190
AcsI	RAATTY	2 cut(s)	1195, 1225
AcuI	CTGAAG	2 cut(s)	944, 1239
AcvI	CACGTG	1 cut(s)	1105
AdeI	CACNNNGTG	2 cut(s)	427, 614
AfaI	GTAC	3 cut(s)	212, 312, 858
AfiI	CCNNNNNNNGG	1 cut(s)	964
AflIII	ACRYGT	2 cut(s)	415, 1102
AgsI	TTSAA	8 cut(s)	289, 342, 382, 551, 811, 863, 976, 1014
AjnI	CCWGG	2 cut(s)	185, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AleI	CACNNNNGTG	1 cut(s)	1103
AluBI	AGCT	4 cut(s)	511, 562, 842, 1067
AluI	AGCT	4 cut(s)	511, 562, 842, 1067
Alw26I	GTCTC	2 cut(s)	22, 531
AlwI	GGATC	5 cut(s)	563, 927, 1082, 1177, 1190
Ama87I	CYCGRG	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	562, 1112
ApoI	RAATTY	2 cut(s)	1195, 1225
AspLEI	GCGC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	354, 1180
AvaI	CYCGRG	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	1182
BarI	GAAGNNNNNNTAC	2 cut(s)	849, 881
BbrPI	CACGTG	1 cut(s)	1105
BbsI	GAAGAC	4 cut(s)	76, 183, 389, 818
BbvI	GCAGC	2 cut(s)	549, 1124
BccI	CCATC	3 cut(s)	893, 1042, 1099
BciT130I	CCWGG	2 cut(s)	187, 719
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	2 cut(s)	85, 400
BcoDI	GTCTC	2 cut(s)	22, 531
BfaI	CTAG	4 cut(s)	320, 350, 644, 762
BfmI	CTRYAG	2 cut(s)	12, 573
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	563, 1113
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	564, 1114
Bme1390I	CCNGG	2 cut(s)	187, 719
BmeT110I	CYCGRG	1 cut(s)	660
BmiI	GGNNCC	1 cut(s)	1184
BmrFI	CCNGG	2 cut(s)	187, 719
BmsI	GCATC	2 cut(s)	789, 1108
BpiI	GAAGAC	4 cut(s)	76, 183, 389, 818
Bpu10I	CCTNAGC	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	39
BsaAI	YACGTR	2 cut(s)	611, 1105
BsaBI	GATNNNNATC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	964
Bse1I	ACTGG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	187, 719
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	964
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	549, 1124
BseYI	CCCAGC	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	964
BsmAI	GTCTC	2 cut(s)	22, 531
BsoBI	CYCGRG	1 cut(s)	660
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	1 cut(s)	1052
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	1184
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	5 cut(s)	563, 927, 1082, 1177, 1190
BsrI	ACTGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	187, 719
Bst4CI	ACNGT	3 cut(s)	7, 16, 1179
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	2 cut(s)	167, 1118
BstBAI	YACGTR	2 cut(s)	611, 1105
BstC8I	GCNNGC	3 cut(s)	443, 657, 1156
BstDEI	CTNAG	3 cut(s)	226, 558, 869
BstENI	CCTNNNNNAGG	1 cut(s)	962
BstF5I	GGATG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	22, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 848, 1118, 1151
BstNI	CCWGG	2 cut(s)	187, 719
BstNSI	RCATGY	2 cut(s)	419, 445
BstSCI	CCNGG	2 cut(s)	185, 717
BstSFI	CTRYAG	2 cut(s)	12, 573
BstV1I	GCAGC	2 cut(s)	549, 1124
BstV2I	GAAGAC	4 cut(s)	76, 183, 389, 818
BstX2I	RGATCY	2 cut(s)	919, 1182
BstYI	RGATCY	2 cut(s)	919, 1182
Bsu15I	ATCGAT	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	1184
Cac8I	GCNNGC	3 cut(s)	443, 657, 1156
CfoI	GCGC	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	211, 311, 857
CspCI	CAANNNNNGTGG	2 cut(s)	1022, 1057
CviAII	CATG	3 cut(s)	416, 442, 1001
CviQI	GTAC	3 cut(s)	211, 311, 857
DdeI	CTNAG	3 cut(s)	226, 558, 869
DraI	TTTAAA	1 cut(s)	757
DraIII	CACNNNGTG	2 cut(s)	427, 614
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	944, 1239
Eco72I	CACGTG	1 cut(s)	1105
Eco88I	CYCGRG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	185, 717
FaeI	CATG	3 cut(s)	419, 445, 1004
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FatI	CATG	3 cut(s)	415, 441, 1000
FbaI	TGATCA	2 cut(s)	85, 400
Fnu4HI	GCNGC	2 cut(s)	563, 1113
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	563, 1113
FspBI	CTAG	4 cut(s)	320, 350, 644, 762
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	563, 1113
GsaI	CCCAGC	1 cut(s)	441
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	419, 445, 1004
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	770
HindII	GTYRAC	1 cut(s)	770
HinfI	GANTC	5 cut(s)	80, 385, 600, 665, 1171
HphI	GGTGA	2 cut(s)	354, 1180
Hpy166II	GTNNAC	4 cut(s)	257, 421, 705, 770
Hpy188I	TCNGA	5 cut(s)	85, 154, 464, 805, 963
Hpy188III	TCNNGA	8 cut(s)	143, 195, 320, 536, 548, 644, 904, 973
Hpy8I	GTNNAC	4 cut(s)	257, 421, 705, 770
Hpy99I	CGWCG	1 cut(s)	821
HpyAV	CCTTC	4 cut(s)	958, 968, 970, 1020
HpyCH4III	ACNGT	3 cut(s)	7, 16, 1179
HpyCH4IV	ACGT	2 cut(s)	610, 1104
HpyCH4V	TGCA	6 cut(s)	170, 412, 575, 851, 1112, 1193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 848, 1118, 1151
HpyF3I	CTNAG	3 cut(s)	226, 558, 869
HpySE526I	ACGT	2 cut(s)	610, 1104
Hsp92II	CATG	3 cut(s)	419, 445, 1004
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	2 cut(s)	85, 400
LmnI	GCTCC	3 cut(s)	839, 1054, 1064
Lsp1109I	GCAGC	2 cut(s)	549, 1124
LweI	GCATC	2 cut(s)	789, 1108
MaeI	CTAG	4 cut(s)	320, 350, 644, 762
MaeII	ACGT	2 cut(s)	610, 1104
MaeIII	GTNAC	3 cut(s)	92, 360, 1096
MflI	RGATCY	2 cut(s)	919, 1182
MluCI	AATT	6 cut(s)	24, 246, 337, 987, 1195, 1225
MlyI	GAGTC	2 cut(s)	379, 609
MnlI	CCTC	4 cut(s)	105, 830, 904, 933
MseI	TTAA	8 cut(s)	60, 234, 485, 677, 756, 894, 950, 1249
MslI	CAYNNNNRTG	1 cut(s)	1103
MspR9I	CCNGG	2 cut(s)	187, 719
MvaI	CCWGG	2 cut(s)	187, 719
MwoI	GCNNNNNNNGC	4 cut(s)	167, 848, 1118, 1151
NlaIII	CATG	3 cut(s)	419, 445, 1004
NlaIV	GGNNCC	1 cut(s)	1184
NmuCI	GTSAC	3 cut(s)	92, 360, 1096
NspI	RCATGY	2 cut(s)	419, 445
OliI	CACNNNNGTG	1 cut(s)	1103
PaeI	GCATGC	1 cut(s)	445
PciI	ACATGT	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	80, 665, 1171
PkrI	GCNGC	2 cut(s)	564, 1114
PleI	GAGTC	2 cut(s)	379, 608
PmaCI	CACGTG	1 cut(s)	1105
PmlI	CACGTG	1 cut(s)	1105
PpsI	GAGTC	2 cut(s)	379, 608
Ppu21I	YACGTR	2 cut(s)	611, 1105
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	185, 717
PspCI	CACGTG	1 cut(s)	1105
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	185, 717
PspN4I	GGNNCC	1 cut(s)	1184
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	2 cut(s)	919, 1182
RsaI	GTAC	3 cut(s)	212, 312, 858
RsaNI	GTAC	3 cut(s)	211, 311, 857
RseI	CAYNNNNRTG	1 cut(s)	1103
SaqAI	TTAA	8 cut(s)	60, 234, 485, 677, 756, 894, 950, 1249
SatI	GCNGC	2 cut(s)	563, 1113
SbfI	CCTGCAGG	1 cut(s)	577
SchI	GAGTC	2 cut(s)	379, 609
ScrFI	CCNGG	2 cut(s)	187, 719
SdaI	CCTGCAGG	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	789, 1108
SfcI	CTRYAG	2 cut(s)	12, 573
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SphI	GCATGC	1 cut(s)	445
Sse8387I	CCTGCAGG	1 cut(s)	577
Sse9I	AATT	6 cut(s)	24, 246, 337, 987, 1195, 1225
SsiI	CCGC	1 cut(s)	1052
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	4 cut(s)	320, 350, 644, 762
StyD4I	CCNGG	2 cut(s)	185, 717
TaaI	ACNGT	3 cut(s)	7, 16, 1179
TaiI	ACGT	2 cut(s)	613, 1107
TaqI	TCGA	7 cut(s)	39, 535, 634, 903, 927, 1076, 1123
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	6 cut(s)	24, 246, 337, 987, 1195, 1225
TatI	WGTACW	1 cut(s)	856
TfiI	GAWTC	3 cut(s)	80, 665, 1171
Tru1I	TTAA	8 cut(s)	60, 234, 485, 677, 756, 894, 950, 1249
Tru9I	TTAA	8 cut(s)	60, 234, 485, 677, 756, 894, 950, 1249
TscAI	CASTG	1 cut(s)	1184
TseFI	GTSAC	3 cut(s)	92, 360, 1096
TseI	GCWGC	2 cut(s)	562, 1112
Tsp45I	GTSAC	3 cut(s)	92, 360, 1096
TspDTI	ATGAA	5 cut(s)	189, 258, 293, 384, 912
TspRI	CASTG	1 cut(s)	1184
XagI	CCTNNNNNAGG	1 cut(s)	962
XapI	RAATTY	2 cut(s)	1195, 1225
XbaI	TCTAGA	2 cut(s)	319, 643
XceI	RCATGY	2 cut(s)	419, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	4 cut(s)	320, 350, 644, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.