Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Forward (+)

11615182 .. 11618876

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATCGGTATCAGAGGATAGAGAAGCCTCGGGAGGAAACGCCGATCAACGAGAATGAGATTCGCATCACCACTCAGGGCAGAATCAGGAACTACATTACCTACGCCACCACTCTCCTCCAGGAGAAAGGGTCCAATGAAATCTCTCTCAAAGCAATGGGCAGAGCTATCAACAAGACTGTCATGATCACTGAACTTATTAAGAGGAGGGTTGGTGGTCTTCATCAAAACACCTACATTGGCTCTACTAATATAACTGACACATGGGAGCCCCTGGAAGAAGGCTTGAAGACCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGTCCTCTACAGGGTATCAAGGACCTATCCCAGCTGATCAAGTGAAGCAATGGACTGAATATGATTATGAAGGACAAGGACCTCCTAGTATGCGAGGAAGCAGACGTGGTCGAGGAAGGGGTAGAGGAAGAGGGAGTTATAGTAATGGAGTGATGGAATACAATGCTGATGGTGGTTTGGATGGTGGCCAGGGCTATGGTGTGTTTGATGGTGGTCATGGTTATGGTGGGTTTGAAGGTGGGCGTGGCTATGCTGGCAGGGGTCAGAGTCGTGGAAGAGTCCGTGGTTATCGTGGGCGTGGGCGAGGATATGGCAGTGGAAGTATGCAACCAGAATCTGGTTATACTGTCTATAATGATTATGGAGGTGGAGCACCTTCTGCTCAAATTCGTGGTAGAGAGCGCGGACGAGGCAGGGCAAGAGGCGGGGGTCGTGGTGGAGGTGGTAGATTAGATGGACCTATCCAGAGTGTTGTGTACTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

281

Amino Acids

30.45

Weight (kDa)

9.89

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 83	5.7e-17	Alba
Rpp20	PF12328	41 - 110	5.9e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccII	CGCG	1 cut(s)	759
AciI	CCGC	2 cut(s)	759, 780
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	741
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	366, 692
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	289, 590
AjiI	CACGTC	2 cut(s)	357, 461
AjnI	CCWGG	4 cut(s)	120, 273, 294, 543
AluBI	AGCT	2 cut(s)	167, 389
AluI	AGCT	2 cut(s)	167, 389
Alw21I	GWGCWC	1 cut(s)	730
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	4 cut(s)	132, 377, 434, 812
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	4 cut(s)	132, 377, 434, 812
BalI	TGGCCA	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	212, 296
Bbv12I	GWGCWC	1 cut(s)	730
BccI	CCATC	5 cut(s)	502, 518, 530, 557, 803
BciT130I	CCWGG	4 cut(s)	122, 275, 296, 545
BclI	TGATCA	2 cut(s)	186, 391
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	363
Bme1390I	CCNGG	4 cut(s)	122, 275, 296, 545
Bme18I	GGWCC	4 cut(s)	132, 377, 434, 812
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	2 cut(s)	357, 461
BmgT120I	GGNCC	4 cut(s)	132, 377, 434, 812
BmiI	GGNNCC	2 cut(s)	133, 270
BmrFI	CCNGG	4 cut(s)	122, 275, 296, 545
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	212, 296
BpmI	CTGGAG	1 cut(s)	104
BsaBI	GATNNNNATC	2 cut(s)	9, 65
BsaJI	CCNNGG	5 cut(s)	29, 273, 294, 544, 637
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 199, 229, 481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 692
Bse3DI	GCAATG	2 cut(s)	162, 410
Bse8I	GATNNNNATC	2 cut(s)	9, 65
BseBI	CCWGG	4 cut(s)	122, 275, 296, 545
BseDI	CCNNGG	5 cut(s)	29, 273, 294, 544, 637
BseGI	GGATG	1 cut(s)	541
BseJI	GATNNNNATC	2 cut(s)	9, 65
BseLI	CCNNNNNNNGG	2 cut(s)	366, 692
BseMI	GCAATG	2 cut(s)	162, 410
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	107, 220
BseYI	CCCAGC	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	730
BsiHKCI	CYCGRG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	366, 692
BsnI	GGCC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	273, 730
Bsp143I	GATC	4 cut(s)	4, 45, 186, 391
BspACI	CCGC	2 cut(s)	759, 780
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	133, 270
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	162, 410
BssECI	CCNNGG	5 cut(s)	29, 273, 294, 544, 637
BssMI	GATC	4 cut(s)	4, 45, 186, 391
Bst2UI	CCWGG	4 cut(s)	122, 275, 296, 545
Bst4CI	ACNGT	3 cut(s)	181, 328, 703
Bst6I	CTCTTC	2 cut(s)	478, 625
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	75, 835
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	4 cut(s)	7, 48, 189, 394
BstMBI	GATC	4 cut(s)	4, 45, 186, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	609, 734, 765
BstNI	CCWGG	4 cut(s)	122, 275, 296, 545
BstSCI	CCNGG	4 cut(s)	120, 273, 294, 543
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	1 cut(s)	759
BstV2I	GAAGAC	2 cut(s)	212, 296
BstXI	CCANNNNNNTGG	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	637
BtrI	CACGTC	2 cut(s)	357, 461
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	189, 324, 676
Cac8I	GCNNGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	692
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	1 cut(s)	759
Cfr13I	GGNCC	4 cut(s)	132, 377, 434, 812
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	4 cut(s)	184, 264, 311, 572
CviJI	RGCY	9 cut(s)	28, 167, 243, 271, 285, 389, 543, 549, 603
CviKI_1	RGCY	9 cut(s)	28, 167, 243, 271, 285, 389, 543, 549, 603
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	2 cut(s)	75, 835
DpnI	GATC	4 cut(s)	6, 47, 188, 393
DpnII	GATC	4 cut(s)	4, 45, 186, 391
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	2 cut(s)	478, 625
EarI	CTCTTC	2 cut(s)	478, 625
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	4 cut(s)	132, 377, 434, 812
Eco88I	CYCGRG	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	377, 434
EcoRII	CCWGG	4 cut(s)	120, 273, 294, 543
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	4 cut(s)	187, 267, 314, 575
FatI	CATG	4 cut(s)	183, 263, 310, 571
FauI	CCCGC	1 cut(s)	773
FbaI	TGATCA	2 cut(s)	186, 391
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	758
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	543
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	187, 267, 314, 575
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HinfI	GANTC	5 cut(s)	61, 84, 622, 633, 689
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	2 cut(s)	15, 621
Hpy188III	TCNNGA	5 cut(s)	32, 88, 184, 820, 837
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	6 cut(s)	275, 337, 419, 465, 584, 741
HpyCH4III	ACNGT	3 cut(s)	181, 328, 703
HpyCH4IV	ACGT	2 cut(s)	356, 460
HpyCH4V	TGCA	1 cut(s)	682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	609, 734, 765
HpyF3I	CTNAG	2 cut(s)	75, 835
HpySE526I	ACGT	2 cut(s)	356, 460
Hsp92II	CATG	4 cut(s)	187, 267, 314, 575
HspAI	GCGC	1 cut(s)	757
Ksp22I	TGATCA	2 cut(s)	186, 391
Kzo9I	GATC	4 cut(s)	4, 45, 186, 391
LmnI	GCTCC	2 cut(s)	268, 725
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	356, 460
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	4 cut(s)	6, 47, 188, 393
MboI	GATC	4 cut(s)	4, 45, 186, 391
MboII	GAAGA	5 cut(s)	212, 290, 301, 495, 642
MhlI	GDGCHC	2 cut(s)	273, 730
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	2 cut(s)	347, 741
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	2 cut(s)	631, 642
Mox20I	TGGCCA	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	122, 275, 296, 545
MvaI	CCWGG	4 cut(s)	122, 275, 296, 545
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	609, 734, 765
NdeII	GATC	4 cut(s)	4, 45, 186, 391
NlaIII	CATG	4 cut(s)	187, 267, 314, 575
NlaIV	GGNNCC	2 cut(s)	133, 270
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	61, 84, 689
PflFI	GACNNNGTC	1 cut(s)	462
PflMI	CCANNNNNTGG	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	120
PleI	GAGTC	2 cut(s)	630, 641
PpsI	GAGTC	2 cut(s)	630, 641
PpuMI	RGGWCCY	2 cut(s)	377, 434
Psp5II	RGGWCCY	2 cut(s)	377, 434
Psp6I	CCWGG	4 cut(s)	120, 273, 294, 543
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	4 cut(s)	120, 273, 294, 543
PspN4I	GGNNCC	2 cut(s)	133, 270
PspPI	GGNCC	4 cut(s)	132, 377, 434, 812
PspPPI	RGGWCCY	2 cut(s)	377, 434
PstNI	CAGNNNCTG	1 cut(s)	692
PsyI	GACNNNGTC	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	4, 45, 186, 391
Sau96I	GGNCC	4 cut(s)	132, 377, 434, 812
SchI	GAGTC	2 cut(s)	631, 642
ScrFI	CCNGG	4 cut(s)	122, 275, 296, 545
SduI	GDGCHC	2 cut(s)	273, 730
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	4 cut(s)	132, 377, 434, 812
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	347, 741
SsiI	CCGC	2 cut(s)	759, 780
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	4 cut(s)	120, 273, 294, 543
TaaI	ACNGT	3 cut(s)	181, 328, 703
TaiI	ACGT	2 cut(s)	359, 463
TaqI	TCGA	1 cut(s)	466
TasI	AATT	2 cut(s)	347, 741
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	3 cut(s)	61, 84, 689
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	3 cut(s)	196, 324, 676
TspDTI	ATGAA	3 cut(s)	153, 212, 438
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	3 cut(s)	196, 324, 676
Tth111I	GACNNNGTC	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	4 cut(s)	132, 377, 434, 812
XapI	RAATTY	1 cut(s)	741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.