RLG00000013527

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002565
Physical Location & Seq
Reverse (-)
32654327 .. 32656897
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013527

Sequence Viewer

Length: 834 bp
ATGGATCGGTATCAGAGGATAGAGAAGCCTCGGGAGGAAACGCCCATTAACGAGAATGAGATTCGCATTACCACTCAGGGTAGAATCAGGAACTACATTACCTACGCCACCACTCTCCTCCAGGAGAAAGGGTCCAATGAAATTTCTCTCAAAGCCATGGGCAGAGCTATCAACAAGACTGTGATGATCACTGAACTTATTAAGAGGAGGGTTGCCGGCCTTCATCAAAACACCTATATTGGCTCTACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGACCTCTACAGGGTATCAGGGACCTATCCCAGCTGATCAAGTGAAACCATGGACTGAAAATGATTATGAAGGACAGGGACCTCCTAGTATGCGAGGAAGAGGACGTGGTCGAGGAAGGGGTAGACGAAGAGGGAATTTTAGTAACGGAGTGATGGTATACAATGCTGATGGCGGTTTCGCTGGTGGTCGGGGCTATGGTGGGTTTGATGGTGGTCGTGGCTATGGTGGGTTTGAAGGTGGGCGTGGCTATGGTGGCAGGGGTCAGGGTCGTGGAAGAGCCCGCGGTTATCGTGGGCGTGTGCGATATGGCAGTGGAAGTATGCAACCAGAGTCAGATGGTTACACTGTTTATAATGATTATGGAGGTGGAGCTCCTTCTGCACAAGGTCGTGGGAGAGAGCGTGGACCAGGCAGAGCAAGAGGCGGTGGCCGCGGTGTAGGTGGTAGATTAGATGGACCTATCCAGAGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

278

Amino Acids

30.08

Weight (kDa)

10.08

Isoelectric Point (pI)

24.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 4.6e-17 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AccI GTMKAC 2 cut(s) 478, 513
AccII CGCG 2 cut(s) 639, 789
AciI CCGC 6 cut(s) 528, 637, 639, 780, 787, 789
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 2 cut(s) 141, 490
AfiI CCNNNNNNNGG 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 1 cut(s) 590
AjiI CACGTC 1 cut(s) 461
AjnI CCWGG 3 cut(s) 120, 294, 763
AluBI AGCT 3 cut(s) 167, 389, 728
AluI AGCT 3 cut(s) 167, 389, 728
Alw21I GWGCWC 1 cut(s) 730
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 3 cut(s) 217, 283, 784
ApoI RAATTY 2 cut(s) 141, 490
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 5 cut(s) 132, 377, 434, 761, 812
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 5 cut(s) 132, 377, 434, 761, 812
BanII GRGCYC 2 cut(s) 637, 730
Bbv12I GWGCWC 1 cut(s) 730
BccI CCATC 5 cut(s) 502, 518, 557, 686, 803
BciT130I CCWGG 3 cut(s) 122, 296, 765
BclI TGATCA 2 cut(s) 186, 391
BfaI CTAG 2 cut(s) 275, 441
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 787
BlsI GCNGC 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 122, 296, 765
Bme18I GGWCC 5 cut(s) 132, 377, 434, 761, 812
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 5 cut(s) 132, 377, 434, 761, 812
BmiI GGNNCC 4 cut(s) 133, 270, 378, 435
BmrFI CCNGG 3 cut(s) 122, 296, 765
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 787
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 495, 525, 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 122, 296, 765
BseDI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 787
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 2 cut(s) 107, 220
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 2 cut(s) 639, 789
BshFI GGCC 3 cut(s) 219, 285, 786
BsiHKAI GWGCWC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 390, 447
BslI CCNNNNNNNGG 1 cut(s) 366
BsmFI GGGAC 2 cut(s) 390, 447
BsnI GGCC 3 cut(s) 219, 285, 786
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 637, 730
Bsp143I GATC 3 cut(s) 4, 186, 391
Bsp19I CCATGG 2 cut(s) 156, 404
BspACI CCGC 6 cut(s) 528, 637, 639, 780, 787, 789
BspANI GGCC 3 cut(s) 219, 285, 786
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 2 cut(s) 639, 789
BspLI GGNNCC 4 cut(s) 133, 270, 378, 435
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 625
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 6 cut(s) 29, 156, 294, 404, 637, 787
BssMI GATC 3 cut(s) 4, 186, 391
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 2 cut(s) 156, 404
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 3 cut(s) 122, 296, 765
Bst4CI ACNGT 3 cut(s) 181, 328, 703
Bst6I CTCTTC 3 cut(s) 448, 478, 625
BstC8I GCNNGC 2 cut(s) 217, 637
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 4 cut(s) 156, 404, 637, 787
BstFNI CGCG 2 cut(s) 639, 789
BstKTI GATC 3 cut(s) 7, 189, 394
BstMBI GATC 3 cut(s) 4, 186, 391
BstMWI GCNNNNNNNGC 3 cut(s) 609, 734, 786
BstNI CCWGG 3 cut(s) 122, 296, 765
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 120, 294, 763
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 2 cut(s) 639, 789
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 3 cut(s) 219, 285, 786
BtgI CCRYGG 4 cut(s) 156, 404, 637, 787
BtrI CACGTC 1 cut(s) 461
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 4 cut(s) 189, 324, 673, 699
Cac8I GCNNGC 2 cut(s) 217, 637
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 5 cut(s) 132, 377, 434, 761, 812
Cfr42I CCGCGG 2 cut(s) 640, 790
CviAII CATG 4 cut(s) 157, 262, 311, 405
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 6, 188, 393
DpnII GATC 3 cut(s) 4, 186, 391
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 3 cut(s) 448, 478, 625
EarI CTCTTC 3 cut(s) 448, 478, 625
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 156, 404
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 637, 730
Eco47I GGWCC 5 cut(s) 132, 377, 434, 761, 812
Eco53kI GAGCTC 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 728
EcoO109I RGGNCCY 2 cut(s) 377, 434
EcoRII CCWGG 3 cut(s) 120, 294, 763
EcoT14I CCWWGG 2 cut(s) 156, 404
EcoT38I GRGCYC 2 cut(s) 637, 730
ErhI CCWWGG 2 cut(s) 156, 404
FaeI CATG 4 cut(s) 160, 265, 314, 408
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 273, 305
FaqI GGGAC 2 cut(s) 390, 447
FatI CATG 4 cut(s) 156, 261, 310, 404
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 2 cut(s) 186, 391
FblI GTMKAC 2 cut(s) 478, 513
Fnu4HI GCNGC 1 cut(s) 787
FriOI GRGCYC 2 cut(s) 637, 730
Fsp4HI GCNGC 1 cut(s) 787
FspBI CTAG 2 cut(s) 275, 441
GluI GCNGC 1 cut(s) 787
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 3 cut(s) 219, 285, 786
HapII CCGG 1 cut(s) 216
Hin1II CATG 4 cut(s) 160, 265, 314, 408
HinfI GANTC 3 cut(s) 61, 84, 686
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 3 cut(s) 479, 514, 761
Hpy188I TCNGA 2 cut(s) 15, 691
Hpy188III TCNNGA 3 cut(s) 32, 88, 820
Hpy8I GTNNAC 3 cut(s) 479, 514, 761
HpyAV CCTTC 8 cut(s) 230, 275, 296, 337, 419, 465, 584, 741
HpyCH4III ACNGT 3 cut(s) 181, 328, 703
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 2 cut(s) 679, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 609, 734, 786
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 4 cut(s) 160, 265, 314, 408
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 2 cut(s) 186, 391
KspI CCGCGG 2 cut(s) 640, 790
Kzo9I GATC 3 cut(s) 4, 186, 391
LguI GCTCTTC 1 cut(s) 625
LmnI GCTCC 3 cut(s) 268, 725, 733
MaeI CTAG 2 cut(s) 275, 441
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 3 cut(s) 328, 497, 695
MalI GATC 3 cut(s) 6, 188, 393
MboI GATC 3 cut(s) 4, 186, 391
MboII GAAGA 5 cut(s) 281, 290, 465, 495, 642
MhlI GDGCHC 2 cut(s) 637, 730
MluCI AATT 3 cut(s) 141, 347, 490
MlyI GAGTC 1 cut(s) 695
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 2 cut(s) 48, 201
MspA1I CMGCKG 3 cut(s) 389, 639, 789
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 122, 296, 765
MvaI CCWGG 3 cut(s) 122, 296, 765
MvnI CGCG 2 cut(s) 639, 789
MwoI GCNNNNNNNGC 3 cut(s) 609, 734, 786
NaeI GCCGGC 1 cut(s) 217
NcoI CCATGG 2 cut(s) 156, 404
NdeII GATC 3 cut(s) 4, 186, 391
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 4 cut(s) 160, 265, 314, 408
NlaIV GGNNCC 4 cut(s) 133, 270, 378, 435
NspI RCATGY 1 cut(s) 265
PceI AGGCCT 1 cut(s) 285
PciI ACATGT 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 625
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 61, 84
PflFI GACNNNGTC 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 1 cut(s) 788
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 2 cut(s) 377, 434
PscI ACATGT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 730
Psp5II RGGWCCY 2 cut(s) 377, 434
Psp6I CCWGG 3 cut(s) 120, 294, 763
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 120, 294, 763
PspN4I GGNNCC 4 cut(s) 133, 270, 378, 435
PspPI GGNCC 5 cut(s) 132, 377, 434, 761, 812
PspPPI RGGWCCY 2 cut(s) 377, 434
PsyI GACNNNGTC 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 730
SacII CCGCGG 2 cut(s) 640, 790
SapI GCTCTTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 48, 201
SatI GCNGC 1 cut(s) 787
Sau3AI GATC 3 cut(s) 4, 186, 391
Sau96I GGNCC 5 cut(s) 132, 377, 434, 761, 812
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 3 cut(s) 122, 296, 765
SduI GDGCHC 2 cut(s) 637, 730
SfcI CTRYAG 1 cut(s) 363
Sfr303I CCGCGG 2 cut(s) 640, 790
SgrBI CCGCGG 2 cut(s) 640, 790
SinI GGWCC 5 cut(s) 132, 377, 434, 761, 812
Sse9I AATT 3 cut(s) 141, 347, 490
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 6 cut(s) 528, 637, 639, 780, 787, 789
SspMI CTAG 2 cut(s) 275, 441
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 120, 294, 763
StyI CCWWGG 2 cut(s) 156, 404
TaaI ACNGT 3 cut(s) 181, 328, 703
TaiI ACGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 466
TasI AATT 3 cut(s) 141, 347, 490
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 2 cut(s) 61, 84
Tru1I TTAA 2 cut(s) 48, 201
Tru9I TTAA 2 cut(s) 48, 201
TscAI CASTG 4 cut(s) 196, 324, 673, 706
TspDTI ATGAA 3 cut(s) 153, 212, 438
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 4 cut(s) 196, 324, 673, 706
Tth111I GACNNNGTC 1 cut(s) 462
VpaK11BI GGWCC 5 cut(s) 132, 377, 434, 761, 812
XapI RAATTY 2 cut(s) 141, 490
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 2 cut(s) 478, 513
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 275, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.