Rorug02G0225000

Ribonuclease P protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002565
Physical Location & Seq
Forward (+)
21951321 .. 21952109
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0225000.1

Sequence Viewer

Length: 789 bp
ATGCCTTATAATATATGGTGCAGTGGGTGCAATTCTATGATCGCAAAGGGTGTTCGGTTCAACGCTGAAAAAAGCATGTCGGAAACTACGTACTTTTCAACAAAGATATGGAGCTTCACCATGAAGGCTGCATGCTGCAAAGAGGAAATTGTTATTCAGACAGATCCGAAGAATTGTCAGTATGTGATTGTTAGTGGTGCTCAACAAAAGACCGAGGATTTTGACAATGAGGATGCGGAAACCCTTGCGCTTCCTGCAGATGAAGAAAGAGGTATGCTGGCGGATCCATTTTATCGTCTTGAACATCAAGAAAAGGATTGGCAAAAGAAGAAGCAAGCCGAGCCAATGCTACTCCTCTTAAAGAGAATTTCCGACCAGAGGCATTCAGATGACTATTCCCTTAACAAGTCCCTGAGGGCCAAACTTAGATCTCAAAAGAAAAGAGTCGCCGAAGAAGAGGCTGCTTCAAGGAGAATGGGCCTCAATATACGACTGCTTCCAGTAGCAGAAGAGGACACTGCCACTGCGTCACGGGTGAAGTTCTCTACCAAGTTTGACAGAAGTAGAAGGGATAAGCGAGCTTTGATTAATGCTTCTTCAATCTTTCCTGGGTCATCTACGTTTCCCATCGTCAATAAGAAAATTCTGGGACTGGAATTTAAGAGAAGGAAAGTAAGTGCTGCTGCAGCATGCATACTTGCCGGGAGATTTAGGCTTTCATCGTGGTCACAGAACTCTGTTTCTTCAAGCAGGCAAAAGTGCACTCCAGTCTCAGTGAGACGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

262

Amino Acids

29.88

Weight (kDa)

9.66

Isoelectric Point (pI)

66.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 1 - 192 2.8e-46 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AciI CCGC 2 cut(s) 236, 281
AclWI GGATC 3 cut(s) 158, 278, 291
AcsI RAATTY 3 cut(s) 366, 642, 656
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 6 cut(s) 61, 99, 302, 468, 600, 747
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 2 cut(s) 114, 581
AluI AGCT 2 cut(s) 114, 581
Alw21I GWGCWC 2 cut(s) 202, 764
Alw26I GTCTC 2 cut(s) 772, 775
Alw44I GTGCAC 1 cut(s) 760
AlwI GGATC 3 cut(s) 158, 278, 291
AoxI GGCC 2 cut(s) 417, 478
ApaLI GTGCAC 1 cut(s) 760
ApeKI GCWGC 6 cut(s) 128, 135, 461, 680, 683, 686
ApoI RAATTY 3 cut(s) 366, 642, 656
AseI ATTAAT 1 cut(s) 588
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 417, 478
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 2 cut(s) 109, 547
AxyI CCTNAGG 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 283
Bbv12I GWGCWC 2 cut(s) 202, 764
BbvI GCAGC 6 cut(s) 115, 122, 448, 667, 670, 698
BccI CCATC 1 cut(s) 635
BciT130I CCWGG 1 cut(s) 609
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 772, 775
BfaI CTAG 1 cut(s) 787
BfmI CTRYAG 2 cut(s) 255, 684
BglII AGATCT 1 cut(s) 428
BisI GCNGC 6 cut(s) 129, 136, 462, 681, 684, 687
BlsI GCNGC 6 cut(s) 130, 137, 463, 682, 685, 688
Bme1390I CCNGG 2 cut(s) 609, 703
BmgT120I GGNCC 2 cut(s) 417, 478
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 609, 703
BmsI GCATC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 213, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 500, 657, 767
Bse21I CCTNAGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 213, 608
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 404, 786
BseNI ACTGG 3 cut(s) 500, 657, 767
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 6 cut(s) 115, 122, 448, 667, 670, 698
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 2 cut(s) 419, 480
BsiHKAI GWGCWC 2 cut(s) 202, 764
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 2 cut(s) 394, 663
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 772, 775
BsmBI CGTCTC 1 cut(s) 772
BsmFI GGGAC 2 cut(s) 394, 663
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 419, 480
Bsp1286I GDGCHC 2 cut(s) 202, 764
Bsp143I GATC 4 cut(s) 39, 163, 283, 428
BspACI CCGC 2 cut(s) 236, 281
BspANI GGCC 2 cut(s) 419, 480
BspCNI CTCAG 2 cut(s) 405, 785
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 2 cut(s) 259, 688
BspPI GGATC 3 cut(s) 158, 278, 291
BsrI ACTGG 3 cut(s) 500, 657, 767
BssECI CCNNGG 2 cut(s) 213, 608
BssMI GATC 4 cut(s) 39, 163, 283, 428
Bst2UI CCWGG 1 cut(s) 609
Bst6I CTCTTC 2 cut(s) 450, 504
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 90
BstC8I GCNNGC 6 cut(s) 133, 279, 336, 579, 691, 752
BstDEI CTNAG 3 cut(s) 413, 425, 772
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 42, 166, 286, 431
BstMAI GTCTC 2 cut(s) 772, 775
BstMBI GATC 4 cut(s) 39, 163, 283, 428
BstMWI GCNNNNNNNGC 4 cut(s) 27, 254, 340, 686
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 3 cut(s) 79, 135, 693
BstSCI CCNGG 2 cut(s) 607, 701
BstSFI CTRYAG 2 cut(s) 255, 684
BstSLI GKGCMC 1 cut(s) 764
BstSNI TACGTA 1 cut(s) 90
BstV1I GCAGC 6 cut(s) 115, 122, 448, 667, 670, 698
BstX2I RGATCY 3 cut(s) 163, 283, 428
BstYI RGATCY 3 cut(s) 163, 283, 428
Bsu36I CCTNAGG 1 cut(s) 413
BsuRI GGCC 2 cut(s) 419, 480
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 3 cut(s) 28, 516, 522
BtsIMutI CAGTG 4 cut(s) 28, 516, 522, 780
Cac8I GCNNGC 6 cut(s) 133, 279, 336, 579, 691, 752
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 417, 478
CseI GACGC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 91
CviAII CATG 4 cut(s) 76, 121, 132, 690
CviJI RGCY 9 cut(s) 114, 128, 338, 343, 419, 461, 480, 581, 715
CviKI_1 RGCY 9 cut(s) 114, 128, 338, 343, 419, 461, 480, 581, 715
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 413, 425, 772
DpnI GATC 4 cut(s) 41, 165, 285, 430
DpnII GATC 4 cut(s) 39, 163, 283, 428
Eam1104I CTCTTC 2 cut(s) 450, 504
EarI CTCTTC 2 cut(s) 450, 504
EciI GGCGGA 1 cut(s) 296
Eco105I TACGTA 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 695
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 4 cut(s) 79, 124, 135, 693
FaqI GGGAC 2 cut(s) 394, 663
FatI CATG 4 cut(s) 75, 120, 131, 689
Fnu4HI GCNGC 6 cut(s) 129, 136, 462, 681, 684, 687
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 6 cut(s) 129, 136, 462, 681, 684, 687
FspBI CTAG 1 cut(s) 787
GlaI GCGC 1 cut(s) 249
GluI GCNGC 6 cut(s) 129, 136, 462, 681, 684, 687
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 2 cut(s) 419, 480
HapII CCGG 1 cut(s) 702
HgaI GACGC 1 cut(s) 516
HhaI GCGC 1 cut(s) 250
Hin1II CATG 4 cut(s) 79, 124, 135, 693
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 444, 783
HpaII CCGG 1 cut(s) 702
HphI GGTGA 2 cut(s) 109, 547
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 5 cut(s) 82, 159, 168, 373, 388
Hpy188III TCNNGA 2 cut(s) 299, 308
Hpy8I GTNNAC 1 cut(s) 762
HpyAV CCTTC 3 cut(s) 118, 561, 660
HpyCH4IV ACGT 2 cut(s) 89, 620
HpyCH4V TGCA 8 cut(s) 21, 30, 131, 138, 257, 686, 693, 762
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 254, 340, 686
HpyF3I CTNAG 3 cut(s) 413, 425, 772
HpySE526I ACGT 2 cut(s) 89, 620
Hsp92II CATG 4 cut(s) 79, 124, 135, 693
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 4 cut(s) 39, 163, 283, 428
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 6 cut(s) 115, 122, 448, 667, 670, 698
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 787
MaeII ACGT 2 cut(s) 89, 620
MaeIII GTNAC 2 cut(s) 528, 726
MalI GATC 4 cut(s) 41, 165, 285, 430
MboI GATC 4 cut(s) 39, 163, 283, 428
MboII GAAGA 8 cut(s) 181, 275, 340, 464, 467, 521, 588, 735
MflI RGATCY 3 cut(s) 163, 283, 428
MhlI GDGCHC 2 cut(s) 202, 764
MluCI AATT 6 cut(s) 31, 147, 172, 366, 642, 656
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 2 cut(s) 60, 396
Mph1103I ATGCAT 1 cut(s) 695
MseI TTAA 4 cut(s) 359, 402, 588, 660
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 1 cut(s) 702
MspR9I CCNGG 2 cut(s) 609, 703
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 27, 254, 340, 686
NciI CCSGG 1 cut(s) 703
NdeII GATC 4 cut(s) 39, 163, 283, 428
NlaIII CATG 4 cut(s) 79, 124, 135, 693
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 528, 726
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 3 cut(s) 79, 135, 693
PaeI GCATGC 2 cut(s) 135, 693
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 783
PkrI GCNGC 6 cut(s) 130, 137, 463, 682, 685, 688
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 588
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 417, 478
PstI CTGCAG 2 cut(s) 259, 688
PsuI RGATCY 3 cut(s) 163, 283, 428
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 4 cut(s) 359, 402, 588, 660
SatI GCNGC 6 cut(s) 129, 136, 462, 681, 684, 687
Sau3AI GATC 4 cut(s) 39, 163, 283, 428
Sau96I GGNCC 2 cut(s) 417, 478
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 2 cut(s) 609, 703
SduI GDGCHC 2 cut(s) 202, 764
SetI ASST 5 cut(s) 92, 116, 274, 583, 623
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 2 cut(s) 255, 684
SmiMI CAYNNNNRTG 1 cut(s) 387
SnaBI TACGTA 1 cut(s) 90
SphI GCATGC 2 cut(s) 135, 693
Sse9I AATT 6 cut(s) 31, 147, 172, 366, 642, 656
SsiI CCGC 2 cut(s) 236, 281
SspMI CTAG 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 607, 701
TaiI ACGT 2 cut(s) 92, 623
TaqII GACCGA 1 cut(s) 227
TasI AATT 6 cut(s) 31, 147, 172, 366, 642, 656
TfiI GAWTC 1 cut(s) 783
Tru1I TTAA 4 cut(s) 359, 402, 588, 660
Tru9I TTAA 4 cut(s) 359, 402, 588, 660
TscAI CASTG 4 cut(s) 28, 523, 529, 780
TseFI GTSAC 2 cut(s) 528, 726
TseI GCWGC 6 cut(s) 128, 135, 461, 680, 683, 686
Tsp45I GTSAC 2 cut(s) 528, 726
TspDTI ATGAA 3 cut(s) 137, 276, 708
TspRI CASTG 4 cut(s) 28, 523, 529, 780
VneI GTGCAC 1 cut(s) 760
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 3 cut(s) 366, 642, 656
XceI RCATGY 3 cut(s) 79, 135, 693
XspI CTAG 1 cut(s) 787
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.