Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

34317504 .. 34321405

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGATTCGCATCACCGCTCAAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTTTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCTATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGAGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTATCCAAGGTCGCGGTAAGCTCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

193

Amino Acids

20.96

Weight (kDa)

9.93

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	9 - 50	1e-11	Alba
Rpp20	PF12328	9 - 77	1.9e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	19
AccII	CGCG	1 cut(s)	564
AciI	CCGC	2 cut(s)	17, 564
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	367
AcuI	CTGAAG	2 cut(s)	272, 561
AfiI	CCNNNNNNNGG	3 cut(s)	286, 355, 557
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	219, 310
AhdI	GACNNNNNGTC	1 cut(s)	31
AjiI	CACGTC	2 cut(s)	163, 362
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	4 cut(s)	68, 250, 396, 571
AluI	AGCT	4 cut(s)	68, 250, 396, 571
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	4 cut(s)	118, 184, 367, 466
ApaLI	GTGCAC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	6, 330
BaeGI	GKGCMC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	550
BccI	CCATC	4 cut(s)	132, 320, 419, 428
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	518
BclI	TGATCA	3 cut(s)	99, 222, 292
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	36, 197, 342
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgBI	CACGTC	2 cut(s)	163, 362
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	171, 467
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	5, 35
BsaBI	GATNNNNATC	1 cut(s)	10
BsaJI	CCNNGG	4 cut(s)	174, 349, 370, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 355, 557
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	4 cut(s)	174, 349, 370, 556
BseGI	GGATG	2 cut(s)	328, 439
BseJI	GATNNNNATC	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	286, 355, 557
BseMI	GCAATG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	120, 186, 369, 468
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	286, 355, 557
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	4 cut(s)	120, 186, 369, 468
Bsp1286I	GDGCHC	2 cut(s)	174, 550
Bsp143I	GATC	4 cut(s)	99, 143, 222, 292
BspACI	CCGC	2 cut(s)	17, 564
BspANI	GGCC	4 cut(s)	120, 186, 369, 468
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	171, 467
BspPI	GGATC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	174, 349, 370, 556
BssMI	GATC	4 cut(s)	99, 143, 222, 292
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	328, 439
BstFNI	CGCG	1 cut(s)	564
BstKTI	GATC	4 cut(s)	102, 146, 225, 295
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	99, 143, 222, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	453, 545
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	4 cut(s)	120, 186, 369, 468
BtrI	CACGTC	2 cut(s)	163, 362
BtsCI	GGATG	2 cut(s)	328, 439
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	466
CviAII	CATG	1 cut(s)	212
DpnI	GATC	4 cut(s)	101, 145, 224, 294
DpnII	GATC	4 cut(s)	99, 143, 222, 292
DriI	GACNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	367
Eam1105I	GACNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	556
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	272, 561
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	1 cut(s)	215
FaiI	YATR	7 cut(s)	155, 213, 417, 450, 510, 531, 537
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	3 cut(s)	99, 222, 292
FokI	GGATG	2 cut(s)	335, 446
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	3 cut(s)	36, 197, 342
HaeIII	GGCC	4 cut(s)	120, 186, 369, 468
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	6, 345
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	6, 330
Hpy166II	GTNNAC	2 cut(s)	338, 548
Hpy188I	TCNGA	2 cut(s)	129, 350
Hpy188III	TCNNGA	3 cut(s)	103, 197, 226
Hpy8I	GTNNAC	2 cut(s)	338, 548
HpyAV	CCTTC	3 cut(s)	102, 176, 536
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	162, 361
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	453, 545
HpySE526I	ACGT	2 cut(s)	162, 361
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	3 cut(s)	99, 222, 292
Kzo9I	GATC	4 cut(s)	99, 143, 222, 292
LmnI	GCTCC	2 cut(s)	169, 393
LpnPI	CCDG	7 cut(s)	161, 188, 200, 252, 300, 340, 367
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	36, 197, 342
MaeII	ACGT	2 cut(s)	162, 361
MalI	GATC	4 cut(s)	101, 145, 224, 294
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	4 cut(s)	99, 143, 222, 292
MboII	GAAGA	3 cut(s)	191, 265, 387
MhlI	GDGCHC	2 cut(s)	174, 550
MluCI	AATT	1 cut(s)	42
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	453, 545
NdeII	GATC	4 cut(s)	99, 143, 222, 292
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	171, 467
NmeAIII	GCCGAG	2 cut(s)	187, 395
NspI	RCATGY	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	6, 345
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	171, 467
PspPI	GGNCC	1 cut(s)	466
Sau3AI	GATC	4 cut(s)	99, 143, 222, 292
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	174, 550
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	20, 50
SmoI	CTYRAG	2 cut(s)	20, 50
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	17, 564
SspMI	CTAG	3 cut(s)	36, 197, 342
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	165, 364
TaqI	TCGA	1 cut(s)	496
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	6, 345
VneI	GTGCAC	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	3 cut(s)	36, 197, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.