Rorug06G0083200

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002565
Physical Location & Seq
Reverse (-)
11036631 .. 11037467
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0083200.1

Sequence Viewer

Length: 441 bp
ATGCCATCTATTGAGTTACCTGATAATGGCACCATCAAAATCTGCCTCAACACCAAAGAATCAACACCGAAGAAGTCAAAGGATAAGGGACTGAAACTAAAGAAAACTAAGTCATCAAAAAAGTCAGGTTCCACATCAGCTGATGCATCGATTTCCGATACTAATGGGAAATCTAATAGGAAGGATGAAGAGACCGGAGGTCTAAAGCTACTTAAACGGCATTGTGTGACAATGTCACGTATTTCAAGGCGCAAGAGCTTAAGGCAGAAGAAAGTGGTTCTCTTCAACATAAAAGGGACTCCATGTGGGAAGGTAGCGAAGGAAATGCAATCATATATTGGTGTCTTAGCCCGTAGAAAGATACCAATCATAAGGACAACTTGGAGAACCAGCAAGCACAAACTTGGAGGTGTCACAGCCGAGGAGAAAGACAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

146

Amino Acids

16.2

Weight (kDa)

10.39

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 26
AflII CTTAAG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 246, 286
AhdI GACNNNNNGTC 1 cut(s) 198
AluBI AGCT 3 cut(s) 140, 208, 258
AluI AGCT 3 cut(s) 140, 208, 258
Alw26I GTCTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 29
BccI CCATC 2 cut(s) 13, 41
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BcoDI GTCTC 1 cut(s) 185
BfrI CTTAAG 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 31, 130
BmsI GCATC 2 cut(s) 133, 155
Bsa29I ATCGAT 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 365
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 149
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 102, 310
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 102, 310
Bso31I GGTCTC 1 cut(s) 185
BspDI ATCGAT 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 31, 130
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 420
Bst6I CTCTTC 2 cut(s) 183, 287
BstAFI CTTAAG 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 108, 346
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 149
BsuTUI ATCGAT 1 cut(s) 149
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 149
CviAII CATG 1 cut(s) 303
CviJI RGCY 5 cut(s) 140, 208, 258, 350, 419
CviKI_1 RGCY 5 cut(s) 140, 208, 258, 350, 419
DdeI CTNAG 2 cut(s) 108, 346
DriI GACNNNNNGTC 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 183, 287
Eam1105I GACNNNNNGTC 1 cut(s) 198
EarI CTCTTC 2 cut(s) 183, 287
Eco31I GGTCTC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 1 cut(s) 306
FaiI YATR 6 cut(s) 290, 304, 334, 336, 371, 439
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 2 cut(s) 102, 310
FatI CATG 1 cut(s) 302
FokI GGATG 1 cut(s) 197
GlaI GCGC 1 cut(s) 251
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 306
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HinfI GANTC 2 cut(s) 59, 298
HpaII CCGG 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 175, 304, 313
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 146, 328
HpyF3I CTNAG 2 cut(s) 108, 346
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 306
HspAI GCGC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 33, 111, 208, 403
LweI GCATC 2 cut(s) 133, 155
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 4 cut(s) 15, 226, 234, 412
MboII GAAGA 4 cut(s) 82, 200, 274, 280
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 4 cut(s) 56, 191, 401, 415
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 213, 260
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 1 cut(s) 195
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 2 cut(s) 31, 130
NmuCI GTSAC 3 cut(s) 226, 234, 412
NsiI ATGCAT 1 cut(s) 148
PfeI GAWTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 232
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 31, 130
PsyI GACNNNGTC 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 213, 260
SchI GAGTC 1 cut(s) 292
SetI ASST 9 cut(s) 22, 130, 142, 202, 210, 241, 260, 315, 412
SfaNI GCATC 2 cut(s) 133, 155
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 213, 260
Tru9I TTAA 2 cut(s) 213, 260
TseFI GTSAC 3 cut(s) 226, 234, 412
Tsp45I GTSAC 3 cut(s) 226, 234, 412
TspDTI ATGAA 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.