Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Forward (+)

21988335 .. 21989316

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACCAGCAAGGAATTTGCAACAATAAAGATCGTTCAATCTTGGAGTCGAACGAGGCCAGCGAAACTTGGCTGGTAAGCTTTAATGATCATGATCGTCTTAAGGGATTACAAGGCAAAAACAGGAGATTTTCTGGGGCCAGTGTTTCCGAAGAAGAGCTGAAGATTCGCAATGAGCTTGAAATGGAAGTAGAAAAAGACTTGGAGGAAGAAATCAAAGATGGGATATGCCATCTTGCTCTGAGATTGCACAGGCTTTATCAGCACCAAAAGGAGAGAAGTGCAAGCAAATTAGCATTTTGTGAGGTGAATATAAACATACAAATGGAAGGAGGAACCAAGATTGAAATAAAAGAGACCAAAAGGCCAGCACCAGCTGAAAGGGAAAAGAGTTTTCCTCCTCGACCTAGTTCTAGATCATCAACTGTGAGATCAGTTATGAAAGTGGGTGCAACAAACACAAAGAAGTTTGATTGGGCCAAAAGTCTGAGATCGAGTGGTGGTCAAGGATGGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

173

Amino Acids

19.75

Weight (kDa)

8.97

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	182
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	39, 182, 347
AluBI	AGCT	4 cut(s)	81, 160, 178, 377
AluI	AGCT	4 cut(s)	81, 160, 178, 377
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	4 cut(s)	57, 138, 365, 477
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	4, 138, 477
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	3 cut(s)	215, 240, 504
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	408, 414
BfrI	CTTAAG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 138, 477
BmiI	GGNNCC	2 cut(s)	139, 337
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BsaBI	GATNNNNATC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	93
BseGI	GGATG	1 cut(s)	515
BseJI	GATNNNNATC	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	233, 479
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	390
BshFI	GGCC	4 cut(s)	59, 140, 367, 479
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	59, 140, 367, 479
Bso31I	GGTCTC	1 cut(s)	350
Bsp143I	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
BspANI	GGCC	4 cut(s)	59, 140, 367, 479
BspCNI	CTCAG	2 cut(s)	234, 480
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	139, 337
BspQI	GCTCTTC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	141
BssMI	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	61, 286, 369
BstDEI	CTNAG	2 cut(s)	242, 488
BstF5I	GGATG	1 cut(s)	515
BstKTI	GATC	6 cut(s)	34, 91, 97, 419, 434, 494
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	59, 140, 367, 479
BtsCI	GGATG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	61, 286, 369
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	4, 138, 477
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	242, 488
DpnI	GATC	6 cut(s)	33, 90, 96, 418, 433, 493
DpnII	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	1 cut(s)	95
FaiI	YATR	5 cut(s)	93, 229, 314, 320, 440
FatI	CATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	88
FspBI	CTAG	2 cut(s)	408, 414
HaeIII	GGCC	4 cut(s)	59, 140, 367, 479
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	2 cut(s)	47, 166
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	151, 243, 489
Hpy188III	TCNNGA	2 cut(s)	92, 414
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	21, 250, 284, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	242, 488
Hsp92II	CATG	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
LguI	GCTCTTC	1 cut(s)	150
LpnPI	CCDG	9 cut(s)	20, 59, 73, 109, 120, 154, 238, 381, 387
MaeI	CTAG	2 cut(s)	408, 414
MalI	GATC	6 cut(s)	33, 90, 96, 418, 433, 493
MboI	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
MboII	GAAGA	4 cut(s)	164, 167, 175, 221
MluCI	AATT	2 cut(s)	15, 290
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	49, 199, 298, 326, 408, 411
MseI	TTAA	3 cut(s)	84, 102, 520
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	139, 337
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	139, 337
PspPI	GGNCC	3 cut(s)	4, 138, 477
PvuII	CAGCTG	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	84, 102, 520
Sau3AI	GATC	6 cut(s)	31, 88, 94, 416, 431, 491
Sau96I	GGNCC	3 cut(s)	4, 138, 477
SchI	GAGTC	1 cut(s)	56
SetI	ASST	6 cut(s)	83, 162, 180, 309, 379, 409
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	15, 290
SspMI	CTAG	2 cut(s)	408, 414
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	50, 403, 494
TasI	AATT	2 cut(s)	15, 290
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	84, 102, 520
Tru9I	TTAA	3 cut(s)	84, 102, 520
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	15
XbaI	TCTAGA	1 cut(s)	413
XspI	CTAG	2 cut(s)	408, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.