Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

32606845 .. 32610772

Gene Structure 3928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATAGGTACCAGAGGGTGGAGAAGCCCAAGGCAGAGGCCACGCCTATAAATGAGAATGAGATTCGCATCACCGCTCAAGGTAGAATGAGGAACTATATTACTTACGCCACCACTCTCCTTCAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTTTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCTATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGAGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTATCCAAGGTCGCGGGCTCACAGGGCGCGGCCGAGGAAGGGGAAGGGGCCGTGGGCGTGGTCGTAGTACTCGACTGGATGGCCAAGCACCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

250

Amino Acids

27.29

Weight (kDa)

10.39

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	20 - 84	1.5e-18	Alba
Rpp20	PF12328	42 - 111	1.5e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	77
AccII	CGCG	2 cut(s)	666, 681
AciI	CCGC	3 cut(s)	75, 666, 681
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	3 cut(s)	469, 682, 733
AcuI	CTGAAG	3 cut(s)	107, 374, 663
AfaI	GTAC	2 cut(s)	11, 721
AfiI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 691
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	321, 412
AhdI	GACNNNNNGTC	1 cut(s)	133
AjiI	CACGTC	2 cut(s)	265, 464
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	4 cut(s)	170, 352, 498, 746
AluI	AGCT	4 cut(s)	170, 352, 498, 746
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	8 cut(s)	39, 220, 286, 469, 568, 682, 700, 733
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	1 cut(s)	746
Asp718I	GGTACC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	568, 700
AsuHPI	GGTGA	2 cut(s)	64, 432
BaeGI	GKGCMC	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	2 cut(s)	276, 672
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	5 cut(s)	234, 422, 521, 530, 725
BceAI	ACGGC	2 cut(s)	555, 687
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	3 cut(s)	201, 324, 394
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	3 cut(s)	138, 299, 444
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	2 cut(s)	682, 747
BlsI	GCNGC	2 cut(s)	683, 748
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgBI	CACGTC	2 cut(s)	265, 464
BmgT120I	GGNCC	2 cut(s)	568, 700
BmiI	GGNNCC	4 cut(s)	11, 273, 569, 701
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	63, 137
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 685, 703
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 691
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 685, 703
BseGI	GGATG	3 cut(s)	430, 541, 736
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 691
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	732
BseSI	GKGCMC	1 cut(s)	652
BseX3I	CGGCCG	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	666, 681
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 684, 702, 735
BshNI	GGYRCC	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 691
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 684, 702, 735
Bsp1286I	GDGCHC	3 cut(s)	276, 652, 672
Bsp143I	GATC	4 cut(s)	201, 245, 324, 394
BspACI	CCGC	3 cut(s)	75, 666, 681
BspANI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 684, 702, 735
BspFNI	CGCG	2 cut(s)	666, 681
BspLI	GGNNCC	4 cut(s)	11, 273, 569, 701
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	732
BssECI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 685, 703
BssMI	GATC	4 cut(s)	201, 245, 324, 394
BssT1I	CCWWGG	2 cut(s)	30, 658
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	290, 668
BstDSI	CCRYGG	1 cut(s)	703
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	430, 541, 736
BstFNI	CGCG	2 cut(s)	666, 681
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	4 cut(s)	204, 248, 327, 397
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	201, 245, 324, 394
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	4 cut(s)	555, 647, 676, 746
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	666, 681
BstV1I	GCAGC	1 cut(s)	733
BstV2I	GAAGAC	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 684, 702, 735
BtgI	CCRYGG	1 cut(s)	703
BtrI	CACGTC	2 cut(s)	265, 464
BtsCI	GGATG	3 cut(s)	430, 541, 736
Cac8I	GCNNGC	2 cut(s)	290, 668
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	568, 700
Csp6I	GTAC	2 cut(s)	10, 720
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	10, 720
DpnI	GATC	4 cut(s)	203, 247, 326, 396
DpnII	GATC	4 cut(s)	201, 245, 324, 394
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	3 cut(s)	469, 682, 733
EagI	CGGCCG	1 cut(s)	682
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	682
Eco130I	CCWWGG	2 cut(s)	30, 658
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	276, 672
Eco52I	CGGCCG	1 cut(s)	682
Eco57I	CTGAAG	3 cut(s)	107, 374, 663
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	30, 658
EcoT38I	GRGCYC	2 cut(s)	276, 672
ErhI	CCWWGG	2 cut(s)	30, 658
FaeI	CATG	1 cut(s)	317
FaiI	YATR	9 cut(s)	50, 99, 257, 315, 519, 552, 612, 633, 639
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	3 cut(s)	201, 324, 394
Fnu4HI	GCNGC	2 cut(s)	682, 747
FokI	GGATG	3 cut(s)	437, 548, 743
FriOI	GRGCYC	2 cut(s)	276, 672
Fsp4HI	GCNGC	2 cut(s)	682, 747
FspBI	CTAG	3 cut(s)	138, 299, 444
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	2 cut(s)	682, 747
HaeIII	GGCC	8 cut(s)	41, 222, 288, 471, 570, 684, 702, 735
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HinfI	GANTC	2 cut(s)	64, 447
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	64, 432
Hpy166II	GTNNAC	2 cut(s)	440, 650
Hpy188I	TCNGA	2 cut(s)	231, 452
Hpy188III	TCNNGA	4 cut(s)	125, 205, 299, 328
Hpy8I	GTNNAC	2 cut(s)	440, 650
HpyAV	CCTTC	6 cut(s)	131, 204, 278, 638, 684, 690
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	264, 463
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	555, 647, 676, 746
HpySE526I	ACGT	2 cut(s)	264, 463
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	679
KpnI	GGTACC	1 cut(s)	13
Ksp22I	TGATCA	3 cut(s)	201, 324, 394
Kzo9I	GATC	4 cut(s)	201, 245, 324, 394
LmnI	GCTCC	2 cut(s)	271, 495
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	3 cut(s)	138, 299, 444
MaeII	ACGT	2 cut(s)	264, 463
MalI	GATC	4 cut(s)	203, 247, 326, 396
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	4 cut(s)	201, 245, 324, 394
MboII	GAAGA	3 cut(s)	293, 367, 489
MhlI	GDGCHC	3 cut(s)	276, 652, 672
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	666, 681
MwoI	GCNNNNNNNGC	4 cut(s)	555, 647, 676, 746
NdeII	GATC	4 cut(s)	201, 245, 324, 394
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	4 cut(s)	11, 273, 569, 701
NmeAIII	GCCGAG	3 cut(s)	289, 497, 710
NspI	RCATGY	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	2 cut(s)	469, 721
PfeI	GAWTC	2 cut(s)	64, 447
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	683, 748
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	11, 273, 569, 701
PspPI	GGNCC	2 cut(s)	568, 700
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	2 cut(s)	11, 721
RsaNI	GTAC	2 cut(s)	10, 720
SatI	GCNGC	2 cut(s)	682, 747
Sau3AI	GATC	4 cut(s)	201, 245, 324, 394
Sau96I	GGNCC	2 cut(s)	568, 700
ScaI	AGTACT	1 cut(s)	721
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	3 cut(s)	276, 652, 672
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	78, 152
SmoI	CTYRAG	2 cut(s)	78, 152
Sse9I	AATT	1 cut(s)	144
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	75, 666, 681
SspMI	CTAG	3 cut(s)	138, 299, 444
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	30, 658
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	267, 466
TaqI	TCGA	2 cut(s)	598, 724
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	2 cut(s)	64, 447
TseI	GCWGC	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	657
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	3 cut(s)	138, 299, 444
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.