Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Forward (+)

38458322 .. 38468593

Gene Structure 10272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1340000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGGAATTATATTACTTACGCCACCACTCTCCTCCATGAGAAAGGATCTAATGAAATTGTTCTCAAGGCAATGGGCAGAGCTATCAGTAAAACTGTTATGATTGCTGAGCTAATAAAGAGAAGGATTGTTGGTCTTCATCAGAATACTTCTATTGGATCAACTGATATTACTGACGTGTACGAGCCCCTGGAAGAAGGCCTGCTTCCTGTAGAGAGTACTCGGCATGTTTCAATGATCACTATTAGCTTGTCGAAGAAGGAGCTTGATACATCCTCTACAGGATATCAATCCCCTCTTCCGATTGACCAAGTGAAACAATTGAATAATTTTGAGGATGATGGAGACGGTTCGCCTGGATTCCGAGCCAGGGGTCGCGGTGGCCGAGGAAGAGGTAGGGGTAGAGGAAACTACAATGGATTTGGGGATTATAATGGAGATAGTTGGGATGGTGGGCGTGGTTATGGTGGCAGAGGTAGAGGCCGTGCAAGAGGTGGTTCTTTTAGGGGTCGTGGACGAGGTTATGGTCAGTTAGGTGGATACTATGATTATGTTGAAGGTGCACCTGCCCAAGGCCGTGGTCTGGTAAGGGGCGGTCAAGGTAGAGGAAGGGCCCGTGGGCGTGGTCGTAATACCAGATTGGATGGACAAGCACCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

222

Amino Acids

23.83

Weight (kDa)

10.25

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	1 - 55	3.8e-16	Alba
Rpp20	PF12328	14 - 82	1.5e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	378, 594
AclWI	GGATC	2 cut(s)	55, 166
AcoI	YGGCCR	1 cut(s)	382
AfaI	GTAC	2 cut(s)	182, 220
AfiI	CCNNNNNNNGG	3 cut(s)	370, 572, 583
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	3 cut(s)	234, 325, 557
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	189, 355, 368
AluBI	AGCT	4 cut(s)	83, 112, 249, 265
AluI	AGCT	4 cut(s)	83, 112, 249, 265
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	339
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	55, 166
AoxI	GGCC	5 cut(s)	199, 382, 481, 574, 612
ApaI	GGGCCC	1 cut(s)	616
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	659
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	612, 613
BaeGI	GKGCMC	2 cut(s)	565, 616
BanII	GRGCYC	2 cut(s)	189, 616
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	3 cut(s)	335, 443, 638
BceAI	ACGGC	2 cut(s)	468, 561
BciT130I	CCWGG	3 cut(s)	191, 357, 370
BciVI	GTATCC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	210, 279
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	660
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	661
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	191, 357, 370
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	612, 613
BmiI	GGNNCC	1 cut(s)	614
BmrFI	CCNGG	3 cut(s)	191, 357, 370
BpiI	GAAGAC	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	289
BsaJI	CCNNGG	6 cut(s)	189, 369, 385, 571, 577, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 572, 583
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	191, 357, 370
BseDI	CCNNGG	6 cut(s)	189, 369, 385, 571, 577, 616
BseGI	GGATG	4 cut(s)	272, 343, 454, 649
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	370, 572, 583
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	565, 616
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	5 cut(s)	201, 384, 483, 576, 614
BsiHKAI	GWGCWC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	370, 572, 583
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsnI	GGCC	5 cut(s)	201, 384, 483, 576, 614
Bsp120I	GGGCCC	1 cut(s)	612
Bsp1286I	GDGCHC	3 cut(s)	189, 565, 616
Bsp143I	GATC	3 cut(s)	47, 158, 237
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	378, 594
BspANI	GGCC	5 cut(s)	201, 384, 483, 576, 614
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	614
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	55, 166
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	6 cut(s)	189, 369, 385, 571, 577, 616
BssMI	GATC	3 cut(s)	47, 158, 237
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	3 cut(s)	191, 357, 370
Bst4CI	ACNGT	2 cut(s)	97, 350
Bst6I	CTCTTC	2 cut(s)	303, 385
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	577, 616
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	4 cut(s)	272, 343, 454, 649
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	50, 161, 240
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	47, 158, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	3 cut(s)	191, 357, 370
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	189, 355, 368
BstSFI	CTRYAG	2 cut(s)	210, 279
BstSLI	GKGCMC	2 cut(s)	565, 616
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	5 cut(s)	201, 384, 483, 576, 614
BtgI	CCRYGG	2 cut(s)	577, 616
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	272, 343, 454, 649
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	612, 613
Csp6I	GTAC	2 cut(s)	181, 219
CviAII	CATG	2 cut(s)	38, 227
CviQI	GTAC	2 cut(s)	181, 219
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	49, 160, 239
DpnII	GATC	3 cut(s)	47, 158, 237
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	303, 385
EarI	CTCTTC	2 cut(s)	303, 385
Eco130I	CCWWGG	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	189, 616
Eco32I	GATATC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	612
EcoRII	CCWGG	3 cut(s)	189, 355, 368
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	2 cut(s)	189, 616
ErhI	CCWWGG	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	41, 230
FaiI	YATR	9 cut(s)	12, 39, 101, 228, 432, 465, 525, 546, 552
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	37, 226
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	4 cut(s)	259, 350, 461, 656
FriOI	GRGCYC	2 cut(s)	189, 616
Fsp4HI	GCNGC	1 cut(s)	660
GluI	GCNGC	1 cut(s)	660
HaeIII	GGCC	5 cut(s)	201, 384, 483, 576, 614
Hin1II	CATG	2 cut(s)	41, 230
HinfI	GANTC	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	181, 515, 563
Hpy188I	TCNGA	3 cut(s)	144, 303, 365
Hpy8I	GTNNAC	3 cut(s)	181, 515, 563
HpyAV	CCTTC	5 cut(s)	117, 191, 253, 551, 603
HpyCH4III	ACNGT	2 cut(s)	97, 350
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	488, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	41, 230
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	47, 158, 237
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	646
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	49, 160, 239
MboI	GATC	3 cut(s)	47, 158, 237
MboII	GAAGA	5 cut(s)	128, 206, 268, 290, 402
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	189, 565, 616
MluCI	AATT	4 cut(s)	7, 57, 320, 328
MroXI	GAANNNNTTC	1 cut(s)	60
MspR9I	CCNGG	3 cut(s)	191, 357, 370
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	191, 357, 370
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	659
NdeII	GATC	3 cut(s)	47, 158, 237
NlaIII	CATG	2 cut(s)	41, 230
NlaIV	GGNNCC	1 cut(s)	614
NmeAIII	GCCGAG	2 cut(s)	202, 410
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	189, 355, 368
PspGI	CCWGG	3 cut(s)	189, 355, 368
PspN4I	GGNNCC	1 cut(s)	614
PspOMI	GGGCCC	1 cut(s)	612
PspPI	GGNCC	2 cut(s)	612, 613
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	182, 220
RsaNI	GTAC	2 cut(s)	181, 219
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	3 cut(s)	47, 158, 237
Sau96I	GGNCC	2 cut(s)	612, 613
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	191, 357, 370
SduI	GDGCHC	3 cut(s)	189, 565, 616
SfcI	CTRYAG	2 cut(s)	210, 279
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	7, 57, 320, 328
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	378, 594
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	189, 355, 368
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	97, 350
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	7, 57, 320, 328
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	2 cut(s)	69, 128
VneI	GTGCAC	1 cut(s)	561
XagI	CCTNNNNNAGG	1 cut(s)	570
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.