Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

5795367 .. 5799720

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1009700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATAGGTTTCAGAGGGTGGAGAAGCCCAAGGCGGAGGCTACGCCCATAAACGAGAATGAGATTCGTATAACGGCTCAAGGCAGAATGAGGAACTATATTACTTACGCCACCACTCTCCTCCAGGAGAAAGGATCTGACGAAATTGTTCTAAAGGCAATGGGCCGAGCTATCAATAAAACGGTTATGATTGCTGAGTTAATAAAGAGAAGGATTCTTGGTCTTCATCAGAATACGTCTATTGGATCAACTGATATAACTGACGTGTACGAGCCCCTAGAAGAAGGCCTGCTTCCTGTCGAGAGTACTCGGCATGTTTCAATGATCACTATTACCTTGTCGAAGAAGGAGCTCCTTACATCCTCTACAGGATATCAATCCCCTCTTCCAGTTGACCAAGTGAAACAGTTGAATGATTTTGAGGACGATGGAGACGGTTCACCTGGATTCCGAGGCAGGGGTCGTGGTGGCCGAGGAAGAGGCCGGGGTAGAGGAAACTACAATGGAGTTGGGGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGTTATGGTGGCAGAGGTAGAGGCCGTTCAAGAGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGTCAGGTGGATACTATGACTATGTCGAAGGTGCACCTGCCCAAGGCCGCGGTCTTGCAGGGCGTGGTCGAGGCAGGGGAAGGGGCCGTGGGCGCGGTCGTAATAACAGATTGGATGGACAAGCACCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

251

Amino Acids

27.14

Weight (kDa)

10.22

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	20 - 84	2.4e-19	Alba
Rpp20	PF12328	41 - 111	2.1e-07	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	2 cut(s)	666, 711
AciI	CCGC	4 cut(s)	35, 664, 666, 711
AclWI	GGATC	2 cut(s)	142, 253
AcoI	YGGCCR	1 cut(s)	469
AfaI	GTAC	2 cut(s)	269, 307
AfiI	CCNNNNNNNGG	2 cut(s)	457, 659
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	321, 412, 576
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	123, 442
AluBI	AGCT	2 cut(s)	170, 352
AluI	AGCT	2 cut(s)	170, 352
Alw21I	GWGCWC	2 cut(s)	354, 652
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	2 cut(s)	142, 253
AoxI	GGCC	7 cut(s)	163, 286, 469, 481, 568, 661, 700
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	1 cut(s)	746
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	2 cut(s)	163, 700
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	652
BanII	GRGCYC	2 cut(s)	276, 354
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	354, 652
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	422, 521, 530, 725
BceAI	ACGGC	3 cut(s)	90, 555, 687
BciT130I	CCWGG	2 cut(s)	125, 444
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	2 cut(s)	664, 747
BlsI	GCNGC	2 cut(s)	665, 748
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	3 cut(s)	125, 444, 485
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	163, 700
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	3 cut(s)	125, 444, 485
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	376
BsaJI	CCNNGG	7 cut(s)	30, 451, 472, 484, 658, 664, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 659
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	125, 444
BseDI	CCNNGG	7 cut(s)	30, 451, 472, 484, 658, 664, 703
BseGI	GGATG	3 cut(s)	359, 541, 736
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	457, 659
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	666, 711
Bsh1285I	CGRYCG	1 cut(s)	715
BshFI	GGCC	7 cut(s)	165, 288, 471, 483, 570, 663, 702
BsiEI	CGRYCG	1 cut(s)	715
BsiHKAI	GWGCWC	2 cut(s)	354, 652
BsiSI	CCGG	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	457, 659
BsmAI	GTCTC	1 cut(s)	426
BsmBI	CGTCTC	1 cut(s)	426
BsnI	GGCC	7 cut(s)	165, 288, 471, 483, 570, 663, 702
Bsp1286I	GDGCHC	3 cut(s)	276, 354, 652
Bsp143I	GATC	3 cut(s)	134, 245, 324
BspACI	CCGC	4 cut(s)	35, 664, 666, 711
BspANI	GGCC	7 cut(s)	165, 288, 471, 483, 570, 663, 702
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	666, 711
BspLI	GGNNCC	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	142, 253
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	7 cut(s)	30, 451, 472, 484, 658, 664, 703
BssMI	GATC	3 cut(s)	134, 245, 324
BssT1I	CCWWGG	2 cut(s)	30, 658
Bst2UI	CCWGG	2 cut(s)	125, 444
Bst4CI	ACNGT	3 cut(s)	184, 408, 437
Bst6I	CTCTTC	2 cut(s)	390, 472
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	2 cut(s)	664, 703
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	359, 541, 736
BstFNI	CGCG	2 cut(s)	666, 711
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	137, 248, 327
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	3 cut(s)	134, 245, 324
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	2 cut(s)	708, 746
BstNI	CCWGG	2 cut(s)	125, 444
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	123, 442, 483
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	666, 711
BstV1I	GCAGC	1 cut(s)	733
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	7 cut(s)	165, 288, 471, 483, 570, 663, 702
BtgI	CCRYGG	2 cut(s)	664, 703
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	359, 541, 736
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	2 cut(s)	163, 700
Cfr42I	CCGCGG	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	268, 306
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	268, 306
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	136, 247, 326
DpnII	GATC	3 cut(s)	134, 245, 324
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	390, 472
EarI	CTCTTC	2 cut(s)	390, 472
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	30, 658
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	276, 354
Eco32I	GATATC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	123, 442
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	30, 658
EcoT38I	GRGCYC	2 cut(s)	276, 354
ErhI	CCWWGG	2 cut(s)	30, 658
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	1 cut(s)	317
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	664, 747
FokI	GGATG	3 cut(s)	346, 548, 743
FriOI	GRGCYC	2 cut(s)	276, 354
Fsp4HI	GCNGC	2 cut(s)	664, 747
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	2 cut(s)	664, 747
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	7 cut(s)	165, 288, 471, 483, 570, 663, 702
HapII	CCGG	1 cut(s)	484
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	64, 214, 447
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	4 cut(s)	268, 394, 440, 650
Hpy188I	TCNGA	4 cut(s)	15, 139, 231, 452
Hpy188III	TCNNGA	2 cut(s)	301, 576
Hpy8I	GTNNAC	4 cut(s)	268, 394, 440, 650
HpyAV	CCTTC	5 cut(s)	204, 278, 340, 638, 690
HpyCH4III	ACNGT	3 cut(s)	184, 408, 437
HpyCH4IV	ACGT	2 cut(s)	236, 264
HpyCH4V	TGCA	2 cut(s)	650, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	708, 746
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	2 cut(s)	236, 264
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	134, 245, 324
LmnI	GCTCC	2 cut(s)	349, 357
Lsp1109I	GCAGC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	236, 264
MalI	GATC	3 cut(s)	136, 247, 326
MboI	GATC	3 cut(s)	134, 245, 324
MboII	GAAGA	5 cut(s)	215, 293, 355, 377, 489
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	276, 354, 652
MluCI	AATT	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	3 cut(s)	125, 444, 485
MvaI	CCWGG	2 cut(s)	125, 444
MvnI	CGCG	2 cut(s)	666, 711
MwoI	GCNNNNNNNGC	2 cut(s)	708, 746
NciI	CCSGG	1 cut(s)	485
NdeII	GATC	3 cut(s)	134, 245, 324
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	701
NmeAIII	GCCGAG	3 cut(s)	191, 289, 497
NspI	RCATGY	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	64, 214, 447
PflFI	GACNNNGTC	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	665, 748
PsiI	TTATAA	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	123, 442
PspGI	CCWGG	2 cut(s)	123, 442
PspN4I	GGNNCC	1 cut(s)	701
PspPI	GGNCC	2 cut(s)	163, 700
PsrI	GAACNNNNNNTAC	2 cut(s)	556, 588
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	638
RsaI	GTAC	2 cut(s)	269, 307
RsaNI	GTAC	2 cut(s)	268, 306
SacI	GAGCTC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	667
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	664, 747
Sau3AI	GATC	3 cut(s)	134, 245, 324
Sau96I	GGNCC	2 cut(s)	163, 700
ScaI	AGTACT	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	125, 444, 485
SduI	GDGCHC	3 cut(s)	276, 354, 652
SfcI	CTRYAG	1 cut(s)	366
Sfr303I	CCGCGG	1 cut(s)	667
SgrBI	CCGCGG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	144
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	35, 664, 666, 711
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	123, 442, 483
StyI	CCWWGG	2 cut(s)	30, 658
TaaI	ACNGT	3 cut(s)	184, 408, 437
TaiI	ACGT	2 cut(s)	239, 267
TaqI	TCGA	5 cut(s)	300, 341, 598, 642, 685
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	3 cut(s)	64, 214, 447
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseI	GCWGC	1 cut(s)	746
TspDTI	ATGAA	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	657
XceI	RCATGY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.