Rorug06G0083300

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002565
Physical Location & Seq
Forward (+)
11047233 .. 11048335
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0083300.1

Sequence Viewer

Length: 501 bp
ATGGCCCCGAAGTTCGTCGCCCTGTCTGTTCTCCTCCTACAACTTGCGGCAACAACTTTCTCCATACACTTGCCACATTATGGTGGACATCCGGAGAAGGGAATTCCAGGAGGTCCAGCAGGTGGAATTCCAGGAGGTCCGGCAGGTGGAATTCCTGCACAGCAAGGGGGTCCGGCGGGGGGAATTCCTGCTCCTGGAGCGGCAGTAGGAGGAGAACAGCCCGGCGGCAACAGCGGGAAAAAGTGGTGCATTGGGAAAAAAGATATTAGGACACGCCTTTTGAAGGATGCTATCGAGGAGTTGTGCAAAGAGGTCGATTGCTCGCCCACAGGACCACAAGGACTATGCTATGATGAATCTATTTGGTCCAGGGCATCGTTCGCGATGAATCTTAAGTATCAAAAGAGTGGTAAAAAGGATTCTGATTGTGATTTCCAAGGAAGGGCACAGATCACCACCATCGACCCAAGCTGGGGAAAATGTGTATTTATCTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

166

Amino Acids

17.15

Weight (kDa)

8.53

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 81 - 149 1.3e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 110, 134
Acc36I ACCTGC 2 cut(s) 110, 134
AccB7I CCANNNNNTGG 2 cut(s) 80, 122
AccBSI CCGCTC 1 cut(s) 200
AccII CGCG 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 5 cut(s) 47, 176, 200, 225, 234
AcsI RAATTY 4 cut(s) 102, 126, 150, 183
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 4 cut(s) 106, 130, 193, 368
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 102, 126, 150, 183
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspS9I GGNCC 6 cut(s) 4, 113, 137, 170, 332, 366
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 5 cut(s) 113, 137, 170, 332, 366
BaeGI GKGCMC 1 cut(s) 448
BccI CCATC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 4 cut(s) 108, 132, 195, 370
BcnI CCSGG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 2 cut(s) 110, 134
BisI GCNGC 3 cut(s) 48, 201, 226
BlsI GCNGC 3 cut(s) 49, 202, 227
Bme1390I CCNGG 5 cut(s) 108, 132, 195, 222, 370
Bme18I GGWCC 5 cut(s) 113, 137, 170, 332, 366
BmgT120I GGNCC 6 cut(s) 4, 113, 137, 170, 332, 366
BmiI GGNNCC 2 cut(s) 6, 171
BmrFI CCNGG 5 cut(s) 108, 132, 195, 222, 370
BmsI GCATC 2 cut(s) 277, 383
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 369, 436
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 4 cut(s) 108, 132, 195, 370
BseDI CCNNGG 2 cut(s) 369, 436
BseGI GGATG 2 cut(s) 88, 292
BseRI GAGGAG 3 cut(s) 23, 225, 311
BseSI GKGCMC 1 cut(s) 448
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 4 cut(s) 92, 140, 173, 222
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 448
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 1 cut(s) 450
Bsp68I TCGCGA 1 cut(s) 383
BspACI CCGC 5 cut(s) 47, 176, 200, 225, 234
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 6, 171
BspMI ACCTGC 2 cut(s) 110, 134
BspTI CTTAAG 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 369, 436
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 4 cut(s) 108, 132, 195, 370
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 88, 292
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 3 cut(s) 197, 231, 380
BstNI CCWGG 4 cut(s) 108, 132, 195, 370
BstSCI CCNGG 5 cut(s) 106, 130, 193, 220, 368
BstSLI GKGCMC 1 cut(s) 448
BstUI CGCG 1 cut(s) 383
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 398
BtsCI GGATG 2 cut(s) 88, 292
BtuMI TCGCGA 1 cut(s) 383
BveI ACCTGC 2 cut(s) 110, 134
Cac8I GCNNGC 1 cut(s) 323
Cfr13I GGNCC 6 cut(s) 4, 113, 137, 170, 332, 366
CviJI RGCY 3 cut(s) 5, 220, 471
CviKI_1 RGCY 3 cut(s) 5, 220, 471
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 436
Eco47I GGWCC 5 cut(s) 113, 137, 170, 332, 366
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoRI GAATTC 4 cut(s) 102, 126, 150, 183
EcoRII CCWGG 4 cut(s) 106, 130, 193, 368
EcoT14I CCWWGG 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 436
FaiI YATR 4 cut(s) 65, 81, 346, 351
FauI CCCGC 2 cut(s) 169, 227
Fnu4HI GCNGC 3 cut(s) 48, 201, 226
FokI GGATG 2 cut(s) 75, 299
Fsp4HI GCNGC 3 cut(s) 48, 201, 226
GluI GCNGC 3 cut(s) 48, 201, 226
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 92, 140, 173, 222
HinfI GANTC 3 cut(s) 356, 388, 419
HpaII CCGG 4 cut(s) 92, 140, 173, 222
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 92, 382
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 91, 277, 435
HpyCH4V TGCA 3 cut(s) 158, 249, 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 231, 380
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 196, 197
LweI GCATC 2 cut(s) 277, 383
MalI GATC 1 cut(s) 452
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 450
MboII GAAGA 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 4 cut(s) 102, 126, 150, 183
MnlI CCTC 6 cut(s) 44, 104, 128, 203, 289, 304
MroI TCCGGA 1 cut(s) 91
MseI TTAA 2 cut(s) 393, 499
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 4 cut(s) 92, 140, 173, 222
MspR9I CCNGG 5 cut(s) 108, 132, 195, 222, 370
MvaI CCWGG 4 cut(s) 108, 132, 195, 370
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 197, 231, 380
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 450
NlaIV GGNNCC 2 cut(s) 6, 171
NruI TCGCGA 1 cut(s) 383
PaqCI CACCTGC 2 cut(s) 110, 134
PfeI GAWTC 3 cut(s) 356, 388, 419
PflMI CCANNNNNTGG 2 cut(s) 80, 122
PfoI TCCNGGA 3 cut(s) 106, 130, 193
PkrI GCNGC 3 cut(s) 49, 202, 227
Psp6I CCWGG 4 cut(s) 106, 130, 193, 368
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 4 cut(s) 106, 130, 193, 368
PspN4I GGNNCC 2 cut(s) 6, 171
PspPI GGNCC 6 cut(s) 4, 113, 137, 170, 332, 366
RruI TCGCGA 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 393, 499
SatI GCNGC 3 cut(s) 48, 201, 226
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 6 cut(s) 4, 113, 137, 170, 332, 366
ScrFI CCNGG 5 cut(s) 108, 132, 195, 222, 370
SduI GDGCHC 1 cut(s) 448
SetI ASST 6 cut(s) 115, 124, 139, 148, 315, 473
SfaNI GCATC 2 cut(s) 277, 383
SinI GGWCC 5 cut(s) 113, 137, 170, 332, 366
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 4 cut(s) 102, 126, 150, 183
SsiI CCGC 5 cut(s) 47, 176, 200, 225, 234
StyD4I CCNGG 5 cut(s) 106, 130, 193, 220, 368
StyI CCWWGG 1 cut(s) 436
TaqI TCGA 3 cut(s) 294, 315, 462
TasI AATT 4 cut(s) 102, 126, 150, 183
TauI GCSGC 3 cut(s) 50, 203, 228
TfiI GAWTC 3 cut(s) 356, 388, 419
Tru1I TTAA 2 cut(s) 393, 499
Tru9I TTAA 2 cut(s) 393, 499
TspDTI ATGAA 2 cut(s) 369, 401
Van91I CCANNNNNTGG 2 cut(s) 80, 122
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 5 cut(s) 113, 137, 170, 332, 366
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 4 cut(s) 102, 126, 150, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.