Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Forward (+)

11081398 .. 11083880

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTCCGTCGGAAGCCGAGGTACTGGTCCGGCAACACAGGCAGGTTCGCTCCGACCCGCGCTCCCTGGCTTGGTTTCTGGGCCTTTGGTCTTCCTTTGGGTACTGGGTCGAATCTGTGGGCTGATCGAGAGAATCCAGTTACTGTTTTAGATCCTCCAGCTAGTCTAATAATCAGCAGCAATGGAAATCTGGAGCTTGTAGATGGAAAGCAACAGTCTTTCTGGTCAACCAATATAAGTGGAGTACCATCAGCATCAGCATCAAATAGTAATAATACCACCCTTGTTGTTCTCTCCGATGATGGAAACTTGATTCTCAAAGATGGTCTATCAGTGGAACCTTTATGGCAAAGTTTTGATTATCCTGGAGATACTTTCCTACCACCCAATACAGCACTCGGGTTCAATACTAAAACTGGAGAGAGACATGTCTTGACTTGCTGGGCAAGTAACAGTGATCCATCCCCAGGAAAATTTGTTGTTGGAATTGCGCCACAGAGGCCACCAGAAGCATTCACTTGGAGATTAGATTCAAGTGCAACTCCATACTGGAGAAGTGGACCATGGGATAAAACAAAGTTCATTGGGATACCAGAAATGGATCCTACTTATCTAAATGTGTTCAACCTTGTAGAAGACGTAGAGAAGGGAACTGCATATATCTCTTTTAATACATACAACAGCTCCCCTGTCACAAATCTGGTGATTTCACCTGAAGGCGTTTTAAAGCAAATGCGTAAGAGAGAAGACAAAGATTGGTATGTAGCTTGGGAGGCTCCCAATAGTACATGTGATATTTATGGGTCGTGTGGTCCTTTTGCAATTTGCAAAAAGGATGAAAACTTAATTTGTAAGTGTTTGAAAGGGTTTGTGCCAAAGTCAGAGGAGGAGTGGAGCAAAGAAATCTGGACCGGAGGGTGCGTGAGGCGAACTAACTTATTGTTTGTACCCACATTTACATGTTCACTCGGACATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

326

Amino Acids

36.18

Weight (kDa)

5.84

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	41 - 148	7.6e-23	D-mannose binding lectin
S_locus_glycop	PF00954	184 - 294	7.7e-33	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AccII	CGCG	1 cut(s)	60
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	4 cut(s)	146, 452, 596, 609
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	5 cut(s)	23, 103, 246, 787, 948
AfiI	CCNNNNNNNGG	2 cut(s)	71, 467
AflIII	ACRYGT	3 cut(s)	427, 788, 959
AgsI	TTSAA	4 cut(s)	406, 534, 625, 862
AjnI	CCWGG	3 cut(s)	65, 364, 466
AluBI	AGCT	5 cut(s)	161, 196, 684, 767, 978
AluI	AGCT	5 cut(s)	161, 196, 684, 767, 978
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	4 cut(s)	146, 452, 596, 609
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	81, 500
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	62, 493
AspS9I	GGNCC	6 cut(s)	4, 27, 81, 560, 812, 909
AsuHPI	GGTGA	2 cut(s)	702, 715
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	5 cut(s)	4, 27, 560, 812, 909
BamHI	GGATCC	1 cut(s)	601
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbsI	GAAGAC	3 cut(s)	83, 642, 753
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	5 cut(s)	197, 256, 296, 317, 469
BciT130I	CCWGG	3 cut(s)	67, 366, 468
BciVI	GTATCC	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	582
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	3 cut(s)	67, 366, 468
Bme18I	GGWCC	5 cut(s)	4, 27, 560, 812, 909
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	6 cut(s)	4, 27, 81, 560, 812, 909
BmiI	GGNNCC	3 cut(s)	339, 603, 777
BmrFI	CCNGG	3 cut(s)	67, 366, 468
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	263, 269
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	3 cut(s)	83, 642, 753
BpmI	CTGGAG	5 cut(s)	141, 212, 387, 438, 571
BsaJI	CCNNGG	4 cut(s)	17, 65, 466, 563
BsaWI	WCCGGW	1 cut(s)	911
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 668, 698, 906, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 467
Bse1I	ACTGG	5 cut(s)	29, 109, 137, 421, 554
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	67, 366, 468
BseDI	CCNNGG	4 cut(s)	17, 65, 466, 563
BseGI	GGATG	2 cut(s)	461, 841
BseLI	CCNNNNNNNGG	2 cut(s)	71, 467
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	5 cut(s)	29, 109, 137, 421, 554
BseRI	GAGGAG	2 cut(s)	899, 902
BseXI	GCAGC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	83, 502
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	30, 912
BslI	CCNNNNNNNGG	2 cut(s)	71, 467
BsmAI	GTCTC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	83, 502
BsoBI	CYCGRG	1 cut(s)	398
Bsp143I	GATC	4 cut(s)	124, 151, 457, 601
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	2 cut(s)	83, 502
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	339, 603, 777
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	4 cut(s)	146, 452, 596, 609
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	5 cut(s)	29, 109, 137, 421, 554
BssECI	CCNNGG	4 cut(s)	17, 65, 466, 563
BssMI	GATC	4 cut(s)	124, 151, 457, 601
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	3 cut(s)	67, 366, 468
Bst4CI	ACNGT	3 cut(s)	145, 216, 455
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	461, 841
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	62, 493
BstKTI	GATC	4 cut(s)	127, 154, 460, 604
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	4 cut(s)	124, 151, 457, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 499, 773
BstNI	CCWGG	3 cut(s)	67, 366, 468
BstNSI	RCATGY	3 cut(s)	431, 792, 963
BstSCI	CCNGG	3 cut(s)	65, 364, 466
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	3 cut(s)	83, 642, 753
BstX2I	RGATCY	2 cut(s)	151, 601
BstYI	RGATCY	2 cut(s)	151, 601
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	83, 502
BtgI	CCRYGG	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	461, 841
BtsIMutI	CAGTG	2 cut(s)	339, 460
BveI	ACCTGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	2 cut(s)	62, 493
Cfr13I	GGNCC	6 cut(s)	4, 27, 81, 560, 812, 909
Csp6I	GTAC	5 cut(s)	22, 102, 245, 786, 947
CspCI	CAANNNNNGTGG	4 cut(s)	220, 255, 268, 303
CviAII	CATG	4 cut(s)	428, 564, 789, 960
CviQI	GTAC	5 cut(s)	22, 102, 245, 786, 947
DpnI	GATC	4 cut(s)	126, 153, 459, 603
DpnII	GATC	4 cut(s)	124, 151, 457, 601
DraI	TTTAAA	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	563
Eco47I	GGWCC	5 cut(s)	4, 27, 560, 812, 909
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	65, 364, 466
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	4 cut(s)	431, 567, 792, 963
FatI	CATG	4 cut(s)	427, 563, 788, 959
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	2 cut(s)	448, 848
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	2 cut(s)	61, 492
GluI	GCNGC	1 cut(s)	178
GsaI	CCCAGC	1 cut(s)	445
GsuI	CTGGAG	5 cut(s)	141, 212, 387, 438, 571
HaeIII	GGCC	2 cut(s)	83, 502
HapII	CCGG	2 cut(s)	30, 912
HhaI	GCGC	2 cut(s)	62, 493
Hin1II	CATG	4 cut(s)	431, 567, 792, 963
Hin6I	GCGC	2 cut(s)	60, 491
HinP1I	GCGC	2 cut(s)	60, 491
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	4 cut(s)	112, 133, 313, 530
HpaII	CCGG	2 cut(s)	30, 912
HphI	GGTGA	2 cut(s)	702, 715
Hpy166II	GTNNAC	3 cut(s)	228, 560, 965
Hpy188I	TCNGA	5 cut(s)	12, 54, 298, 883, 971
Hpy188III	TCNNGA	4 cut(s)	128, 191, 433, 907
Hpy8I	GTNNAC	3 cut(s)	228, 560, 965
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	640, 710
HpyCH4III	ACNGT	3 cut(s)	145, 216, 455
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	4 cut(s)	539, 656, 821, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 499, 773
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	431, 567, 792, 963
HspAI	GCGC	2 cut(s)	60, 491
Kzo9I	GATC	4 cut(s)	124, 151, 457, 601
LmnI	GCTCC	6 cut(s)	55, 67, 193, 689, 781, 894
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	263, 269
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	139, 449, 691
MalI	GATC	4 cut(s)	126, 153, 459, 603
MboI	GATC	4 cut(s)	124, 151, 457, 601
MboII	GAAGA	3 cut(s)	83, 647, 758
MflI	RGATCY	2 cut(s)	151, 601
MluCI	AATT	4 cut(s)	473, 486, 822, 846
MmeI	TCCRAC	2 cut(s)	77, 463
MnlI	CCTC	8 cut(s)	12, 165, 492, 766, 877, 880, 908, 918
MseI	TTAA	3 cut(s)	669, 725, 845
MslI	CAYNNNNRTG	1 cut(s)	958
MspI	CCGG	2 cut(s)	30, 912
MspR9I	CCNGG	3 cut(s)	67, 366, 468
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	3 cut(s)	67, 366, 468
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	39, 499, 773
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	4 cut(s)	124, 151, 457, 601
NlaIII	CATG	4 cut(s)	431, 567, 792, 963
NlaIV	GGNNCC	3 cut(s)	339, 603, 777
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	3 cut(s)	431, 792, 963
PciI	ACATGT	3 cut(s)	427, 788, 959
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	112, 133, 313, 530
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	179
PscI	ACATGT	3 cut(s)	427, 788, 959
Psp6I	CCWGG	3 cut(s)	65, 364, 466
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	3 cut(s)	65, 364, 466
PspN4I	GGNNCC	3 cut(s)	339, 603, 777
PspPI	GGNCC	6 cut(s)	4, 27, 81, 560, 812, 909
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	151, 601
RsaI	GTAC	5 cut(s)	23, 103, 246, 787, 948
RsaNI	GTAC	5 cut(s)	22, 102, 245, 786, 947
RseI	CAYNNNNRTG	1 cut(s)	958
SaqAI	TTAA	3 cut(s)	669, 725, 845
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	124, 151, 457, 601
Sau96I	GGNCC	6 cut(s)	4, 27, 81, 560, 812, 909
ScrFI	CCNGG	3 cut(s)	67, 366, 468
SfaNI	GCATC	2 cut(s)	263, 269
SinI	GGWCC	5 cut(s)	4, 27, 560, 812, 909
SmiMI	CAYNNNNRTG	1 cut(s)	958
Sse9I	AATT	4 cut(s)	473, 486, 822, 846
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	65, 364, 466
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	3 cut(s)	145, 216, 455
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	110, 127
TasI	AATT	4 cut(s)	473, 486, 822, 846
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	4 cut(s)	112, 133, 313, 530
Tru1I	TTAA	3 cut(s)	669, 725, 845
Tru9I	TTAA	3 cut(s)	669, 725, 845
TscAI	CASTG	2 cut(s)	339, 460
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	571, 852
TspRI	CASTG	2 cut(s)	339, 460
VpaK11BI	GGWCC	5 cut(s)	4, 27, 560, 812, 909
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	3 cut(s)	431, 792, 963
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.