Rroxscaffold_7G00193990

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002565
Physical Location & Seq
Reverse (-)
35644023 .. 35648747
4725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193990.1

Sequence Viewer

Length: 927 bp
ATGTGGTGGCGTTGTCGGAGGACGCCGGACGGCATTGAAATCGCCGGATCTAGCTTCGCGGATCTGGTCGTCTGCGGCGAGAAAAGAAACATGGATCGGTATCAGAGGATAGAGAAGCCTCGGGAGGAAACGCCCATTAACGAGAATGAGATTCGCATTACCACTCAGGGCAGAATCAGGAACTACATTACCTACGCCACCACTCTCCTCCAGGAGAAAGGGTCCAATGATATATCTCTCAAAGCCATGGGTAGAGCTATCAACAAGACTGTGATGATCACTGAACTTATTAAGAGGAGGGTTGCCGGCCTTCATCAAAACACCTATATTGGCTCTACTGATATAACTGACATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCCCTGGAAACTACTCGCCATGTTTCAGTGATTACAGTTACTTTGTCCAAGAAGGAATTGGACACGTCCTCTACAGGGTATCAGGGACCTATCCCAGCTGATCAAGTGAAACCATGGACTGAATATGATTATGAAGGACAGGGACCTCCTAGTAGGCGAGGAAGAGGACGTGGTCGAGGAAGGGGTAGAGGAAGAGGGAATTTTAGTAACGGAGTGATGGTATACAATGCTGATGGCGGTTTCGATGGTGGTCGGGGCTATGGTGGGTTTGATGGTGGTCGTGGCTATGGTGGGTTTGAAGGTGGGCTTGGCTATGGTGGCAGGGGTCAGGGTCGTGGAAGAGTCCGCGGTTATCGTGGGCGTGTGCGAGGATATGGCAGTGGAAGTATGCAACCAGAATCCGGTGGTTATACTGTTTATAATGATTATGGAGGTGGAGCTCCTTCTGCACAAGGTCGTGGGAGAGAGCGGGGACCAGGCAGAGCAAGAGGCGGTGGCCGTGGTGTAGGTGGTAGATTAGATGGACCTATCCAGAGTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

308

Amino Acids

33.49

Weight (kDa)

9.89

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 49 - 113 4.4e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AccBSI CCGCTC 1 cut(s) 850
AccI GTMKAC 1 cut(s) 603
AccII CGCG 2 cut(s) 59, 729
AciI CCGC 7 cut(s) 59, 75, 618, 727, 729, 850, 873
AclWI GGATC 3 cut(s) 55, 69, 102
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 456, 782
AflIII ACRYGT 2 cut(s) 351, 444
AgsI TTSAA 2 cut(s) 38, 680
AjiI CACGTC 2 cut(s) 447, 551
AjnI CCWGG 3 cut(s) 210, 384, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 4 cut(s) 54, 257, 479, 821
AluI AGCT 4 cut(s) 54, 257, 479, 821
Alw21I GWGCWC 1 cut(s) 823
AlwI GGATC 3 cut(s) 55, 69, 102
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 3 cut(s) 307, 373, 877
ApoI RAATTY 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 5 cut(s) 222, 467, 524, 854, 905
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 5 cut(s) 222, 467, 524, 854, 905
BanII GRGCYC 1 cut(s) 823
Bbv12I GWGCWC 1 cut(s) 823
BccI CCATC 5 cut(s) 592, 608, 620, 647, 896
BceAI ACGGC 2 cut(s) 46, 864
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 3 cut(s) 212, 386, 858
BclI TGATCA 2 cut(s) 276, 481
BfaI CTAG 3 cut(s) 51, 365, 531
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 3 cut(s) 212, 386, 858
Bme18I GGWCC 5 cut(s) 222, 467, 524, 854, 905
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 2 cut(s) 447, 551
BmgT120I GGNCC 5 cut(s) 222, 467, 524, 854, 905
BmiI GGNNCC 5 cut(s) 223, 360, 468, 525, 855
BmrFI CCNGG 3 cut(s) 212, 386, 858
BpmI CTGGAG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 6 cut(s) 119, 246, 384, 494, 727, 880
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 585, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 782
Bse118I RCCGGY 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 3 cut(s) 212, 386, 858
BseDI CCNNGG 6 cut(s) 119, 246, 384, 494, 727, 880
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 456, 782
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 197, 310
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 2 cut(s) 59, 729
BshFI GGCC 3 cut(s) 309, 375, 879
BsiHKAI GWGCWC 1 cut(s) 823
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 4 cut(s) 26, 45, 306, 783
BslFI GGGAC 3 cut(s) 480, 537, 867
BslI CCNNNNNNNGG 2 cut(s) 456, 782
BsmFI GGGAC 3 cut(s) 480, 537, 867
BsnI GGCC 3 cut(s) 309, 375, 879
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 823
Bsp143I GATC 5 cut(s) 47, 61, 94, 276, 481
Bsp19I CCATGG 2 cut(s) 246, 494
BspACI CCGC 7 cut(s) 59, 75, 618, 727, 729, 850, 873
BspANI GGCC 3 cut(s) 309, 375, 879
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 2 cut(s) 59, 729
BspLI GGNNCC 5 cut(s) 223, 360, 468, 525, 855
BspPI GGATC 3 cut(s) 55, 69, 102
BsrBI CCGCTC 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 6 cut(s) 119, 246, 384, 494, 727, 880
BssMI GATC 5 cut(s) 47, 61, 94, 276, 481
BssNAI GTATAC 1 cut(s) 604
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 246, 494
Bst1107I GTATAC 1 cut(s) 604
Bst2UI CCWGG 3 cut(s) 212, 386, 858
Bst4CI ACNGT 3 cut(s) 271, 418, 796
Bst6I CTCTTC 3 cut(s) 538, 568, 715
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 4 cut(s) 246, 494, 727, 880
BstFNI CGCG 2 cut(s) 59, 729
BstKTI GATC 5 cut(s) 50, 64, 97, 279, 484
BstMBI GATC 5 cut(s) 47, 61, 94, 276, 481
BstMWI GCNNNNNNNGC 2 cut(s) 699, 827
BstNI CCWGG 3 cut(s) 212, 386, 858
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 3 cut(s) 210, 384, 856
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 2 cut(s) 59, 729
BstX2I RGATCY 2 cut(s) 47, 61
BstYI RGATCY 2 cut(s) 47, 61
BstZ17I GTATAC 1 cut(s) 604
BsuRI GGCC 3 cut(s) 309, 375, 879
BtgI CCRYGG 4 cut(s) 246, 494, 727, 880
BtrI CACGTC 2 cut(s) 447, 551
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 279, 414, 766
Cac8I GCNNGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 5 cut(s) 222, 467, 524, 854, 905
Cfr42I CCGCGG 1 cut(s) 730
CseI GACGC 1 cut(s) 31
CviAII CATG 5 cut(s) 91, 247, 352, 401, 495
DdeI CTNAG 1 cut(s) 165
DpnI GATC 5 cut(s) 49, 63, 96, 278, 483
DpnII GATC 5 cut(s) 47, 61, 94, 276, 481
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 3 cut(s) 538, 568, 715
EarI CTCTTC 3 cut(s) 538, 568, 715
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 2 cut(s) 246, 494
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 823
Eco47I GGWCC 5 cut(s) 222, 467, 524, 854, 905
Eco53kI GAGCTC 1 cut(s) 821
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 821
EcoO109I RGGNCCY 2 cut(s) 467, 524
EcoRII CCWGG 3 cut(s) 210, 384, 856
EcoT14I CCWWGG 2 cut(s) 246, 494
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 2 cut(s) 246, 494
FaeI CATG 5 cut(s) 94, 250, 355, 404, 498
FalI AAGNNNNNCTT 6 cut(s) 360, 392, 363, 395, 672, 704
FaqI GGGAC 3 cut(s) 480, 537, 867
FatI CATG 5 cut(s) 90, 246, 351, 400, 494
FauI CCCGC 1 cut(s) 843
FbaI TGATCA 2 cut(s) 276, 481
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 3 cut(s) 51, 365, 531
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 309, 375, 879
HapII CCGG 4 cut(s) 26, 45, 306, 783
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 5 cut(s) 94, 250, 355, 404, 498
HinfI GANTC 4 cut(s) 151, 174, 723, 779
HpaII CCGG 4 cut(s) 26, 45, 306, 783
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 2 cut(s) 18, 105
Hpy188III TCNNGA 3 cut(s) 122, 178, 913
Hpy8I GTNNAC 1 cut(s) 604
HpyAV CCTTC 8 cut(s) 320, 365, 386, 427, 509, 555, 674, 834
HpyCH4III ACNGT 3 cut(s) 271, 418, 796
HpyCH4IV ACGT 2 cut(s) 446, 550
HpyCH4V TGCA 2 cut(s) 772, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 699, 827
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 446, 550
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 5 cut(s) 94, 250, 355, 404, 498
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 2 cut(s) 276, 481
KspI CCGCGG 1 cut(s) 730
Kzo9I GATC 5 cut(s) 47, 61, 94, 276, 481
LmnI GCTCC 3 cut(s) 358, 818, 826
MaeI CTAG 3 cut(s) 51, 365, 531
MaeII ACGT 2 cut(s) 446, 550
MaeIII GTNAC 2 cut(s) 418, 587
MalI GATC 5 cut(s) 49, 63, 96, 278, 483
MbiI CCGCTC 1 cut(s) 850
MboI GATC 5 cut(s) 47, 61, 94, 276, 481
MboII GAAGA 5 cut(s) 371, 380, 555, 585, 732
MflI RGATCY 2 cut(s) 47, 61
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 2 cut(s) 437, 580
MlyI GAGTC 1 cut(s) 732
MroNI GCCGGC 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 2 cut(s) 138, 291
MspA1I CMGCKG 2 cut(s) 479, 729
MspI CCGG 4 cut(s) 26, 45, 306, 783
MspR9I CCNGG 3 cut(s) 212, 386, 858
MvaI CCWGG 3 cut(s) 212, 386, 858
MvnI CGCG 2 cut(s) 59, 729
MwoI GCNNNNNNNGC 2 cut(s) 699, 827
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 2 cut(s) 246, 494
NdeII GATC 5 cut(s) 47, 61, 94, 276, 481
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 5 cut(s) 94, 250, 355, 404, 498
NlaIV GGNNCC 5 cut(s) 223, 360, 468, 525, 855
NspI RCATGY 1 cut(s) 355
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 151, 174, 779
PflFI GACNNNGTC 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
PpuMI RGGWCCY 2 cut(s) 467, 524
PscI ACATGT 1 cut(s) 351
PsiI TTATAA 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 823
Psp5II RGGWCCY 2 cut(s) 467, 524
Psp6I CCWGG 3 cut(s) 210, 384, 856
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 3 cut(s) 210, 384, 856
PspN4I GGNNCC 5 cut(s) 223, 360, 468, 525, 855
PspPI GGNCC 5 cut(s) 222, 467, 524, 854, 905
PspPPI RGGWCCY 2 cut(s) 467, 524
PsuI RGATCY 2 cut(s) 47, 61
PsyI GACNNNGTC 1 cut(s) 552
PvuII CAGCTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 823
SacII CCGCGG 1 cut(s) 730
SaqAI TTAA 2 cut(s) 138, 291
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 5 cut(s) 47, 61, 94, 276, 481
Sau96I GGNCC 5 cut(s) 222, 467, 524, 854, 905
SchI GAGTC 1 cut(s) 732
ScrFI CCNGG 3 cut(s) 212, 386, 858
SduI GDGCHC 1 cut(s) 823
SfcI CTRYAG 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 730
SgrBI CCGCGG 1 cut(s) 730
SinI GGWCC 5 cut(s) 222, 467, 524, 854, 905
Sse9I AATT 2 cut(s) 437, 580
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 7 cut(s) 59, 75, 618, 727, 729, 850, 873
SspMI CTAG 3 cut(s) 51, 365, 531
SstI GAGCTC 1 cut(s) 823
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 210, 384, 856
StyI CCWWGG 2 cut(s) 246, 494
TaaI ACNGT 3 cut(s) 271, 418, 796
TaiI ACGT 2 cut(s) 449, 553
TaqI TCGA 2 cut(s) 556, 624
TasI AATT 2 cut(s) 437, 580
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 3 cut(s) 151, 174, 779
Tru1I TTAA 2 cut(s) 138, 291
Tru9I TTAA 2 cut(s) 138, 291
TscAI CASTG 3 cut(s) 286, 414, 766
TspDTI ATGAA 2 cut(s) 302, 528
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 3 cut(s) 286, 414, 766
Tth111I GACNNNGTC 1 cut(s) 552
VpaK11BI GGWCC 5 cut(s) 222, 467, 524, 854, 905
XapI RAATTY 1 cut(s) 580
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 3 cut(s) 51, 365, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.