Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002565

Physical Location & Seq

Genomic Coordinates Reverse (-)

30834731 .. 30838692

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCCCCTTATCAGCAGTTGGGTTCCAAAACCGCAAAAACACTTTGGGGCGTAATTTCAAATCTGAAGCAAAAGGCTTTTGAAGAAAAAGAAGAAGAAGAAGAAGACCACCGAGAGAGCCATAACCACATAGTCAGTCACGCCACAGTTTCGGACTCTCTCTCTGTCTCTCTCTCCCAACTCAACGAGATGGATAGGTACCAGAGGGTGGAGAAGCCCAAGGCAGAGGCCACGCCTATAAACGAGAATGAGATTCGCATCACCGCTCAAGGTAGAATGAGGAACTATATTACTTACGCCACCACTCTGCTTCAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTTTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCAATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGAGGTAGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTGTCCAAGGTCGCGGGCTCACAGGGCGCGGCCGAGGAAGGGGAAGGGGCCGCGGGCGTGGTCGTAATACTCGACTGGATGGCCAAGCACCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

314

Amino Acids

34.45

Weight (kDa)

9.78

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	83 - 147	2.2e-18	Alba
Rpp20	PF12328	104 - 174	3.7e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76010 AT1G76010
fragaria_vesca	FvH4_1g23910 FvH4_1g23910 FvH4_1g23910 FvH4_2g13290
malus_domestica	MD01G1009700.v1.1 MD15G1340000.v1.1
prunus_persica	Prupe.6G161100_v2.0.a1 Prupe.6G161100_v2.0.a1 Prupe.8G036600_v2.0.a1 Prupe.8G036600_v2.0.a1
pyrus_communis	pycom01g03580 pycom15g29980
rosa_chinensis	RchiOBHm_Chr2g0119911 RchiOBHm_Chr6g0274731
rosa_laevigata	RLG00000013527 RLG00000018500
rosa_multiflora	Rmu_co8425251.1_g000001 Rmu_sc0006223.1_g000010 Rmu_sc0013532.1_g000003
rosa_roxburghii	Rroxscaffold_7G00193990
rosa_rugosa	Rorug02G0225000 Rorug02G0225100 Rorug02G0225200 Rorug02G0225200 Rorug02G0225300 Rorug06G0083200 Rorug06G0083300 Rorug06G0083400 Rorug06G0083500
rosa_samantha	Rh2AG282400 Rh2BG293800 Rh2DG307600 Rh6AG199300 Rh6BG203100 Rh6CG203300 Rh6DG194900
rosa_wichuraiana	Rw2G022540 Rw6G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	266
AccII	CGCG	3 cut(s)	855, 870, 894
AciI	CCGC	6 cut(s)	33, 264, 855, 870, 892, 894
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	3 cut(s)	658, 871, 922
AcuI	CTGAAG	4 cut(s)	86, 296, 563, 852
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	208, 577, 646, 848, 880
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	60, 83, 510, 601
AhdI	GACNNNNNGTC	1 cut(s)	322
AjiI	CACGTC	2 cut(s)	454, 653
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AluBI	AGCT	4 cut(s)	359, 541, 687, 935
AluI	AGCT	4 cut(s)	359, 541, 687, 935
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	2 cut(s)	172, 485
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	8 cut(s)	228, 409, 475, 658, 757, 871, 889, 922
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	1 cut(s)	935
Asp718I	GGTACC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	757, 889
AsuHPI	GGTGA	2 cut(s)	253, 621
BaeGI	GKGCMC	1 cut(s)	841
BalI	TGGCCA	1 cut(s)	924
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	2 cut(s)	465, 861
BbsI	GAAGAC	2 cut(s)	111, 551
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	6 cut(s)	184, 423, 611, 710, 719, 914
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	809
BclI	TGATCA	3 cut(s)	390, 513, 583
BcoDI	GTCTC	2 cut(s)	172, 485
BfaI	CTAG	3 cut(s)	327, 488, 633
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	1 cut(s)	809
BisI	GCNGC	3 cut(s)	871, 892, 936
BlsI	GCNGC	3 cut(s)	872, 893, 937
Bme1390I	CCNGG	1 cut(s)	467
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgBI	CACGTC	2 cut(s)	454, 653
BmgT120I	GGNCC	2 cut(s)	757, 889
BmiI	GGNNCC	5 cut(s)	25, 200, 462, 758, 890
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	111, 551
BpuEI	CTTGAG	2 cut(s)	252, 326
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	7 cut(s)	219, 465, 640, 661, 847, 874, 892
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 577, 646, 848, 880
Bse1I	ACTGG	1 cut(s)	921
Bse3DI	GCAATG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	7 cut(s)	219, 465, 640, 661, 847, 874, 892
BseGI	GGATG	3 cut(s)	619, 730, 925
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	5 cut(s)	208, 577, 646, 848, 880
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	921
BseSI	GKGCMC	1 cut(s)	841
BseX3I	CGGCCG	1 cut(s)	871
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	3 cut(s)	855, 870, 894
Bsh1285I	CGRYCG	1 cut(s)	874
BshFI	GGCC	8 cut(s)	230, 411, 477, 660, 759, 873, 891, 924
BshNI	GGYRCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	841
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	5 cut(s)	208, 577, 646, 848, 880
BsmAI	GTCTC	2 cut(s)	172, 485
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	8 cut(s)	230, 411, 477, 660, 759, 873, 891, 924
Bsp1286I	GDGCHC	3 cut(s)	465, 841, 861
Bsp143I	GATC	4 cut(s)	390, 434, 513, 583
BspACI	CCGC	6 cut(s)	33, 264, 855, 870, 892, 894
BspANI	GGCC	8 cut(s)	230, 411, 477, 660, 759, 873, 891, 924
BspFNI	CGCG	3 cut(s)	855, 870, 894
BspLI	GGNNCC	5 cut(s)	25, 200, 462, 758, 890
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	921
BssECI	CCNNGG	7 cut(s)	219, 465, 640, 661, 847, 874, 892
BssMI	GATC	4 cut(s)	390, 434, 513, 583
BssT1I	CCWWGG	2 cut(s)	219, 847
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	148, 373
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	3 cut(s)	479, 857, 896
BstDSI	CCRYGG	1 cut(s)	892
BstENI	CCTNNNNNAGG	1 cut(s)	846
BstF5I	GGATG	3 cut(s)	619, 730, 925
BstFNI	CGCG	3 cut(s)	855, 870, 894
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	4 cut(s)	393, 437, 516, 586
BstMAI	GTCTC	2 cut(s)	172, 485
BstMBI	GATC	4 cut(s)	390, 434, 513, 583
BstMCI	CGRYCG	1 cut(s)	874
BstMWI	GCNNNNNNNGC	4 cut(s)	744, 836, 865, 935
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	841
BstUI	CGCG	3 cut(s)	855, 870, 894
BstV1I	GCAGC	1 cut(s)	922
BstV2I	GAAGAC	2 cut(s)	111, 551
BstZI	CGGCCG	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	8 cut(s)	230, 411, 477, 660, 759, 873, 891, 924
BtgI	CCRYGG	1 cut(s)	892
BtrI	CACGTC	2 cut(s)	454, 653
BtsCI	GGATG	3 cut(s)	619, 730, 925
Cac8I	GCNNGC	3 cut(s)	479, 857, 896
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	2 cut(s)	757, 889
Cfr42I	CCGCGG	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	503
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	4 cut(s)	392, 436, 515, 585
DpnII	GATC	4 cut(s)	390, 434, 513, 583
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	3 cut(s)	658, 871, 922
EagI	CGGCCG	1 cut(s)	871
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	871
Eco130I	CCWWGG	2 cut(s)	219, 847
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	465, 861
Eco52I	CGGCCG	1 cut(s)	871
Eco57I	CTGAAG	4 cut(s)	86, 296, 563, 852
EcoNI	CCTNNNNNAGG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	219, 847
EcoT38I	GRGCYC	2 cut(s)	465, 861
ErhI	CCWWGG	2 cut(s)	219, 847
FaeI	CATG	1 cut(s)	506
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	1 cut(s)	502
FauI	CCCGC	2 cut(s)	848, 887
FbaI	TGATCA	3 cut(s)	390, 513, 583
Fnu4HI	GCNGC	3 cut(s)	871, 892, 936
FokI	GGATG	3 cut(s)	626, 737, 932
FriOI	GRGCYC	2 cut(s)	465, 861
Fsp4HI	GCNGC	3 cut(s)	871, 892, 936
FspBI	CTAG	3 cut(s)	327, 488, 633
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	3 cut(s)	871, 892, 936
HaeIII	GGCC	8 cut(s)	230, 411, 477, 660, 759, 873, 891, 924
HapII	CCGG	1 cut(s)	578
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HinfI	GANTC	3 cut(s)	155, 253, 636
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	253, 621
Hpy166II	GTNNAC	2 cut(s)	629, 839
Hpy188I	TCNGA	4 cut(s)	66, 154, 420, 641
Hpy188III	TCNNGA	4 cut(s)	314, 394, 488, 517
Hpy8I	GTNNAC	2 cut(s)	629, 839
HpyAV	CCTTC	5 cut(s)	393, 467, 827, 873, 879
HpyCH4III	ACNGT	2 cut(s)	148, 373
HpyCH4IV	ACGT	2 cut(s)	453, 652
HpyCH4V	TGCA	1 cut(s)	839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	744, 836, 865, 935
HpySE526I	ACGT	2 cut(s)	453, 652
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	1 cut(s)	868
KpnI	GGTACC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	390, 513, 583
KspI	CCGCGG	1 cut(s)	895
Kzo9I	GATC	4 cut(s)	390, 434, 513, 583
LmnI	GCTCC	2 cut(s)	460, 684
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	3 cut(s)	327, 488, 633
MaeII	ACGT	2 cut(s)	453, 652
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	392, 436, 515, 585
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	4 cut(s)	390, 434, 513, 583
MboII	GAAGA	9 cut(s)	95, 104, 107, 110, 113, 116, 482, 556, 678
MhlI	GDGCHC	3 cut(s)	465, 841, 861
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	3 cut(s)	54, 333, 573
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	924
MspA1I	CMGCKG	2 cut(s)	894, 935
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	3 cut(s)	855, 870, 894
MwoI	GCNNNNNNNGC	4 cut(s)	744, 836, 865, 935
NdeII	GATC	4 cut(s)	390, 434, 513, 583
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	5 cut(s)	25, 200, 462, 758, 890
NmeAIII	GCCGAG	3 cut(s)	478, 686, 899
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	2 cut(s)	658, 910
PfeI	GAWTC	2 cut(s)	253, 636
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	872, 893, 937
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	5 cut(s)	25, 200, 462, 758, 890
PspPI	GGNCC	2 cut(s)	757, 889
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacII	CCGCGG	1 cut(s)	895
SatI	GCNGC	3 cut(s)	871, 892, 936
Sau3AI	GATC	4 cut(s)	390, 434, 513, 583
Sau96I	GGNCC	2 cut(s)	757, 889
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	3 cut(s)	465, 841, 861
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	555
Sfr303I	CCGCGG	1 cut(s)	895
SgrBI	CCGCGG	1 cut(s)	895
SmlI	CTYRAG	2 cut(s)	267, 341
SmoI	CTYRAG	2 cut(s)	267, 341
Sse9I	AATT	3 cut(s)	54, 333, 573
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	6 cut(s)	33, 264, 855, 870, 892, 894
SspMI	CTAG	3 cut(s)	327, 488, 633
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	2 cut(s)	219, 847
TaaI	ACNGT	2 cut(s)	148, 373
TaiI	ACGT	2 cut(s)	456, 655
TaqI	TCGA	2 cut(s)	787, 913
TasI	AATT	3 cut(s)	54, 333, 573
TauI	GCSGC	2 cut(s)	873, 894
TfiI	GAWTC	2 cut(s)	253, 636
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	837
XagI	CCTNNNNNAGG	1 cut(s)	846
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	3 cut(s)	327, 488, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.