Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

3407671 .. 3408506

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G07714.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATCACTCTGGAGGATGAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

196

Amino Acids

22.54

Weight (kDa)

9.53

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	39
AciI	CCGC	2 cut(s)	142, 368
AclWI	GGATC	4 cut(s)	12, 21, 90, 301
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	1 cut(s)	398
AluBI	AGCT	2 cut(s)	159, 313
AluI	AGCT	2 cut(s)	159, 313
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	4 cut(s)	12, 21, 90, 301
Ama87I	CYCGRG	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	574
AvaI	CYCGRG	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	441
BccI	CCATC	2 cut(s)	380, 427
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	574
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	422
BseGI	GGATG	2 cut(s)	64, 229
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
BspACI	CCGC	2 cut(s)	142, 368
BspDI	ATCGAT	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	12, 21, 90, 301
BsrDI	GCAATG	1 cut(s)	470
BssMI	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	448, 532
BstDEI	CTNAG	2 cut(s)	86, 335
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	64, 229
BstKTI	GATC	6 cut(s)	7, 16, 85, 309, 331, 587
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	572
BstSFI	CTRYAG	1 cut(s)	289
BstX2I	RGATCY	4 cut(s)	4, 82, 306, 328
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	4 cut(s)	4, 82, 306, 328
Bsu15I	ATCGAT	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	64, 229
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	157, 495
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	448, 532
ClaI	ATCGAT	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	5 cut(s)	98, 120, 298, 343, 447
CviJI	RGCY	6 cut(s)	91, 159, 257, 313, 365, 530
CviKI_1	RGCY	6 cut(s)	91, 159, 257, 313, 365, 530
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	86, 335
DpnI	GATC	6 cut(s)	6, 15, 84, 308, 330, 586
DpnII	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
DrdI	GACNNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	5 cut(s)	101, 123, 301, 346, 450
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	5 cut(s)	97, 119, 297, 342, 446
FauI	CCCGC	1 cut(s)	375
FokI	GGATG	2 cut(s)	71, 236
FriOI	GRGCYC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	74
HapII	CCGG	1 cut(s)	573
Hin1II	CATG	5 cut(s)	101, 123, 301, 346, 450
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	62, 339, 562
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	573
Hpy166II	GTNNAC	2 cut(s)	28, 440
Hpy188I	TCNGA	5 cut(s)	42, 245, 377, 501, 584
Hpy188III	TCNNGA	2 cut(s)	53, 360
Hpy8I	GTNNAC	2 cut(s)	28, 440
HpyAV	CCTTC	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	34, 97, 150, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	86, 335
Hsp92II	CATG	5 cut(s)	101, 123, 301, 346, 450
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	38, 44, 172, 268, 323, 512, 586
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	6 cut(s)	6, 15, 84, 308, 330, 586
MboI	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
MboII	GAAGA	2 cut(s)	182, 557
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	4 cut(s)	4, 82, 306, 328
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	192, 238
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	6 cut(s)	49, 66, 217, 462, 521, 527
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	574
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
NlaIII	CATG	5 cut(s)	101, 123, 301, 346, 450
NspI	RCATGY	1 cut(s)	450
PaeI	GCATGC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	62, 339
PflFI	GACNNNGTC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	137
PsuI	RGATCY	4 cut(s)	4, 82, 306, 328
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	6 cut(s)	4, 13, 82, 306, 328, 584
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	574
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	33, 77, 161, 209, 287, 315, 406
SfcI	CTRYAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	450
Sse9I	AATT	2 cut(s)	192, 238
SsiI	CCGC	2 cut(s)	142, 368
StyD4I	CCNGG	1 cut(s)	572
TaqI	TCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	192, 238
TfiI	GAWTC	2 cut(s)	62, 339
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	157, 495
TspDTI	ATGAA	4 cut(s)	75, 108, 331, 440
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	157, 495
Tth111I	GACNNNGTC	1 cut(s)	278
XceI	RCATGY	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.