Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

56668188 .. 56670154

Gene Structure 1967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTGGTATACTTTCAGAGGCGACCTTGTTGCACGAGGGTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCGGCCGTGACAGACTATGTGATTCGAGGCATGAAGACATGGCTGACGGAACTAGCAATTGGGGGTGCGACGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGACCCGTCTTGCAAACACTGCAGACTTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTCCATATGTTAGTTCCAGTTGAGGAAGTGTGGAATGAATGCCTTAATGAAAGTGTTTTGGATAACCCACAAGGAAATTCCTTGCTTTATGTGGTGATACTCATGAATGCCTATGCCCATTTGCTTTGGATTCAAAGAAGTTCTTCTGGTGTGATGTCTGGCAGTAACCTCATGGACATATGGGACTGTCTATGTAAAAATCTCGAAATAAGGGATGTTACATTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTCTGTGGGGTAGCTTACGGAAGATCCTGGTTCAGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCCGTAACCTTGATATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAGGACCGATATGCTCTACTTCATTGTCTAGAGGGAGTACTTGAATGTTACGAAAGTCTCAGTCGTTCCCCATTCAAGACTTTAAGTGACTTGCTTGGGTTCATGCTGACTTATCCTGCTAAATCAATGATGGCAAAAGAAGCATGCACCATTGCTAGGATACCCCGCAAAAGTTGGACTAGGAAGCAAATAAAGGAGACGTTAAAGATACTGATCAATATACTGGATAAGAGAGGCCCTGTAATAGGGGAAGACCTCATTGAGGCAGCTAGCTCCGAAGTGAGTCCAAGTGAGCTACTGGACTATGCAATTTCAACAATGAAGAATCTGAAGTGTGGGAAGCACCAAATTGTAGCTTGCAAGGAGAATCCAATCTCAAATCTGATGGAGTATAGACTGGAGACTCTTCCTCTCCTAACAACTGAGCCCCTTGATGTTCACGGTGATGCAGTTTTTGTATATGAAACTGTTGTTCTACAATACCCCGAAGTCGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACAATGTTAAAATACAATTACCTTATGAAGGGAACTGAACCATGTTGCAAAGGCTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

420

Amino Acids

47.62

Weight (kDa)

5.91

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	283 - 359	8.7e-08	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	8, 1197
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	77, 838
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	2 cut(s)	78, 185
AcsI	RAATTY	2 cut(s)	328, 566
AcuI	CTGAAG	1 cut(s)	1022
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	6 cut(s)	495, 828, 917, 934, 1163, 1228
AgsI	TTSAA	8 cut(s)	167, 243, 386, 656, 716, 748, 987, 1179
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	7 cut(s)	182, 530, 620, 941, 945, 967, 1028
AluI	AGCT	7 cut(s)	182, 530, 620, 941, 945, 967, 1028
Alw26I	GTCTC	4 cut(s)	629, 734, 863, 1067
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	3 cut(s)	78, 185, 907
ApeKI	GCWGC	1 cut(s)	938
ApoI	RAATTY	2 cut(s)	328, 566
Asp700I	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
AspS9I	GGNCC	2 cut(s)	676, 908
AsuHPI	GGTGA	4 cut(s)	151, 358, 1127, 1195
AsuNHI	GCTAGC	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	676
BalI	TGGCCA	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	1101
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	3 cut(s)	52, 116, 930
BbvI	GCAGC	1 cut(s)	950
BccI	CCATC	2 cut(s)	796, 1051
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	2 cut(s)	554, 825
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	4 cut(s)	629, 734, 863, 1067
BfaI	CTAG	6 cut(s)	128, 617, 701, 828, 852, 942
BfmI	CTRYAG	1 cut(s)	208
BfuI	GTATCC	2 cut(s)	554, 825
BisI	GCNGC	2 cut(s)	78, 939
BlsI	GCNGC	2 cut(s)	79, 940
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	676, 908
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	1108
BmtI	GCTAGC	1 cut(s)	945
BpiI	GAAGAC	3 cut(s)	52, 116, 930
BpmI	CTGGAG	1 cut(s)	1091
BsaBI	GATNNNNATC	1 cut(s)	884
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	6 cut(s)	495, 828, 917, 934, 1163, 1228
Bse1I	ACTGG	4 cut(s)	269, 900, 975, 1074
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	884
BseBI	CCWGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	472, 487
BseJI	GATNNNNATC	1 cut(s)	884
BseLI	CCNNNNNNNGG	6 cut(s)	495, 828, 917, 934, 1163, 1228
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	3 cut(s)	659, 745, 1086
BseNI	ACTGG	4 cut(s)	269, 900, 975, 1074
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	950
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	80, 187, 909
BsiEI	CGRYCG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	6 cut(s)	495, 828, 917, 934, 1163, 1228
BsmAI	GTCTC	4 cut(s)	629, 734, 863, 1067
BsmBI	CGTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	3 cut(s)	231, 296, 364
BsnI	GGCC	3 cut(s)	80, 187, 909
Bsp1286I	GDGCHC	1 cut(s)	1101
Bsp143I	GATC	3 cut(s)	505, 539, 885
BspACI	CCGC	2 cut(s)	77, 838
BspANI	GGCC	3 cut(s)	80, 187, 909
BspCNI	CTCAG	3 cut(s)	658, 744, 1087
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	254
BspMAI	CTGCAG	1 cut(s)	212
BspOI	GCTAGC	1 cut(s)	945
BspPI	GGATC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	4 cut(s)	269, 900, 975, 1074
BssMI	GATC	3 cut(s)	505, 539, 885
BssNAI	GTATAC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	252, 440, 1115, 1141
Bst6I	CTCTTC	1 cut(s)	1083
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	515, 817, 943, 1030
BstDEI	CTNAG	3 cut(s)	645, 731, 1095
BstENI	CCTNNNNNAGG	3 cut(s)	915, 932, 1226
BstF5I	GGATG	2 cut(s)	472, 487
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	508, 542, 888
BstMAI	GTCTC	4 cut(s)	629, 734, 863, 1067
BstMBI	GATC	3 cut(s)	505, 539, 885
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 812
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	950
BstV2I	GAAGAC	3 cut(s)	52, 116, 930
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZ17I	GTATAC	1 cut(s)	9
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	554, 825
BsuRI	GGCC	3 cut(s)	80, 187, 909
BtsCI	GGATG	2 cut(s)	472, 487
BtsI	GCAGTG	2 cut(s)	205, 1174
BtsIMutI	CAGTG	2 cut(s)	205, 1174
Cac8I	GCNNGC	4 cut(s)	515, 817, 943, 1030
CciI	TCATGA	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	676, 908
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	8 cut(s)	106, 114, 236, 355, 424, 775, 816, 1242
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	3 cut(s)	645, 731, 1095
DpnI	GATC	3 cut(s)	507, 541, 887
DpnII	GATC	3 cut(s)	505, 539, 885
EaeI	YGGCCR	2 cut(s)	78, 185
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	1083
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	1101
Eco47I	GGWCC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	1022
EcoNI	CCTNNNNNAGG	3 cut(s)	915, 932, 1226
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	1101
Esp3I	CGTCTC	1 cut(s)	863
FaeI	CATG	8 cut(s)	109, 117, 239, 358, 427, 778, 819, 1245
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	8 cut(s)	105, 113, 235, 354, 423, 774, 815, 1241
FauI	CCCGC	1 cut(s)	845
FauNDI	CATATG	2 cut(s)	258, 431
FbaI	TGATCA	1 cut(s)	885
FblI	GTMKAC	2 cut(s)	8, 1197
Fnu4HI	GCNGC	2 cut(s)	78, 939
FokI	GGATG	2 cut(s)	479, 494
FriOI	GRGCYC	1 cut(s)	1101
Fsp4HI	GCNGC	2 cut(s)	78, 939
FspBI	CTAG	6 cut(s)	128, 617, 701, 828, 852, 942
GluI	GCNGC	2 cut(s)	78, 939
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	3 cut(s)	80, 187, 909
Hin1II	CATG	8 cut(s)	109, 117, 239, 358, 427, 778, 819, 1245
HinfI	GANTC	6 cut(s)	97, 382, 955, 997, 1039, 1075
HphI	GGTGA	4 cut(s)	151, 358, 1127, 1195
Hpy166II	GTNNAC	3 cut(s)	9, 1111, 1198
Hpy188I	TCNGA	4 cut(s)	17, 949, 1002, 1056
Hpy188III	TCNNGA	4 cut(s)	355, 455, 701, 748
Hpy8I	GTNNAC	3 cut(s)	9, 1111, 1198
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	170, 1222
HpyCH4III	ACNGT	4 cut(s)	252, 440, 1115, 1141
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	9 cut(s)	32, 201, 210, 218, 819, 980, 1032, 1121, 1248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 812
HpyF3I	CTNAG	3 cut(s)	645, 731, 1095
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	8 cut(s)	109, 117, 239, 358, 427, 778, 819, 1245
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	3 cut(s)	505, 539, 885
LmnI	GCTCC	2 cut(s)	179, 950
Lsp1109I	GCAGC	1 cut(s)	950
LweI	GCATC	1 cut(s)	1108
MaeI	CTAG	6 cut(s)	128, 617, 701, 828, 852, 942
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	6 cut(s)	82, 416, 469, 629, 719, 758
MalI	GATC	3 cut(s)	507, 541, 887
MboI	GATC	3 cut(s)	505, 539, 885
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	1101
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	6 cut(s)	132, 328, 566, 981, 1020, 1216
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	964, 1069
MmeI	TCCRAC	1 cut(s)	827
Mox20I	TGGCCA	1 cut(s)	187
MroXI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	5 cut(s)	297, 755, 875, 1208, 1261
MslI	CAYNNNNRTG	1 cut(s)	1116
Msp20I	TGGCCA	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	3 cut(s)	231, 296, 364
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	207, 812
NdeI	CATATG	2 cut(s)	258, 431
NdeII	GATC	3 cut(s)	505, 539, 885
NheI	GCTAGC	1 cut(s)	941
NlaIII	CATG	8 cut(s)	109, 117, 239, 358, 427, 778, 819, 1245
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	82, 758
NspI	RCATGY	1 cut(s)	819
PaeI	GCATGC	1 cut(s)	819
PagI	TCATGA	1 cut(s)	354
PctI	GAATGC	3 cut(s)	231, 296, 364
PdmI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
PfeI	GAWTC	4 cut(s)	97, 382, 997, 1039
PkrI	GCNGC	2 cut(s)	79, 940
PleI	GAGTC	2 cut(s)	963, 1069
PpsI	GAGTC	2 cut(s)	963, 1069
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	676, 908
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	5 cut(s)	297, 755, 875, 1208, 1261
SatI	GCNGC	2 cut(s)	78, 939
Sau3AI	GATC	3 cut(s)	505, 539, 885
Sau96I	GGNCC	2 cut(s)	676, 908
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	2 cut(s)	964, 1069
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	1101
SfaNI	GCATC	1 cut(s)	1108
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	6 cut(s)	132, 328, 566, 981, 1020, 1216
SsiI	CCGC	2 cut(s)	77, 838
SspI	AATATT	1 cut(s)	1175
SspMI	CTAG	6 cut(s)	128, 617, 701, 828, 852, 942
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	252, 440, 1115, 1141
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	2 cut(s)	100, 456
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	6 cut(s)	132, 328, 566, 981, 1020, 1216
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	4 cut(s)	97, 382, 997, 1039
Tru1I	TTAA	5 cut(s)	297, 755, 875, 1208, 1261
Tru9I	TTAA	5 cut(s)	297, 755, 875, 1208, 1261
TscAI	CASTG	2 cut(s)	212, 1174
TseFI	GTSAC	2 cut(s)	82, 758
TseI	GCWGC	1 cut(s)	938
Tsp45I	GTSAC	2 cut(s)	82, 758
TspGWI	ACGGA	3 cut(s)	137, 549, 617
TspRI	CASTG	2 cut(s)	212, 1174
VpaK11BI	GGWCC	1 cut(s)	676
XagI	CCTNNNNNAGG	3 cut(s)	915, 932, 1226
XapI	RAATTY	2 cut(s)	328, 566
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	1 cut(s)	819
XmiI	GTMKAC	2 cut(s)	8, 1197
XmnI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
XspI	CTAG	6 cut(s)	128, 617, 701, 828, 852, 942
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.