Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

41166 .. 41711

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004296.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgttagttccagttgaggaagtgtggaatgaatgccttaatgaaagtgttttggataacccacaaggaaattccttgctgtatgtggtgatacacatgaatgcctatgcccatttgctttggattcaaagaagttcttctggtgtgatgtctggcagtaacctcatggacatatgggactgtctatgtaaaaatcttgaaataagagatgttacgttggaggatgttgccaagaaagggaatgttgatcttcgcttgctctgtggggtggctcacggaagatcctggttcaataggtggggatacaaattttggagagggagatatggagtagatgaagtgaagtatgaggttgccctagcttatctctgtaaccttgacatttatcaggttgttgaagcgtttcacaaggtggaggaccaatatgctctagaagtctcagtcgctccccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

151

Amino Acids

17.4

Weight (kDa)

5.13

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	70, 308
AdeI	CACNNNGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	128, 200, 292, 398
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	70, 308
Asp700I	GAANNNNTTC	2 cut(s)	136, 402
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	2 cut(s)	359, 431
BfuI	GTATCC	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	38, 106
Bsp143I	GATC	2 cut(s)	247, 281
BspCNI	CTCAG	1 cut(s)	452
BspPI	GGATC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	247, 281
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	250, 284
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	247, 281
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	418
CviAII	CATG	2 cut(s)	97, 166
CviJI	RGCY	2 cut(s)	272, 362
CviKI_1	RGCY	2 cut(s)	272, 362
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	2 cut(s)	249, 283
DpnII	GATC	2 cut(s)	247, 281
DraIII	CACNNNGTG	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	100, 169
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	96, 165
FauNDI	CATATG	1 cut(s)	173
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	2 cut(s)	359, 431
Hin1II	CATG	2 cut(s)	100, 169
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	197, 431
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	100, 169
Kzo9I	GATC	2 cut(s)	247, 281
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	6 cut(s)	24, 126, 138, 271, 298, 374
MaeI	CTAG	2 cut(s)	359, 431
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	158, 211, 371
MalI	GATC	2 cut(s)	249, 283
MboI	GATC	2 cut(s)	247, 281
MboII	GAAGA	3 cut(s)	129, 242, 291
MflI	RGATCY	1 cut(s)	281
MluCI	AATT	2 cut(s)	70, 308
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	10, 173, 214, 311, 343, 409
MroXI	GAANNNNTTC	2 cut(s)	136, 402
MseI	TTAA	2 cut(s)	39, 454
MslI	CAYNNNNRTG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	2 cut(s)	38, 106
MvaI	CCWGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	2 cut(s)	247, 281
NlaIII	CATG	2 cut(s)	100, 169
PctI	GAATGC	2 cut(s)	38, 106
PdmI	GAANNNNTTC	2 cut(s)	136, 402
PfeI	GAWTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	39, 454
Sau3AI	GATC	2 cut(s)	247, 281
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	8 cut(s)	165, 218, 299, 354, 364, 378, 393, 414
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	70, 308
SspMI	CTAG	2 cut(s)	359, 431
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	218
TasI	AATT	2 cut(s)	70, 308
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	39, 454
Tru9I	TTAA	2 cut(s)	39, 454
TspDTI	ATGAA	4 cut(s)	45, 57, 113, 351
TspGWI	ACGGA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	2 cut(s)	70, 308
XbaI	TCTAGA	1 cut(s)	430
XmnI	GAANNNNTTC	2 cut(s)	136, 402
XspI	CTAG	2 cut(s)	359, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.