Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

5408695 .. 5416010

Gene Structure 7316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGCTTGCTGGGTCGTGCGTGCTCCGGCAGTGTAGGGCTGGAGTCGACTTGGTGGTACAGAGCATGAGGTGGATCTGCGGCAAGACGCAAGACTCGGGTCGGCAGGCGCGCTGGGAAGGGCATAACAGAGGCGACCTTCTTGCACGAGGGTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCGGTCGTTACAGACTATGCAATTCGAGGCATGAAGACATGGCTGACGGAACTAGGAATTGGGGGTGCGAAGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGAACCGTCTTGCATACACTGCAGAATTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTTCATATGTTAGTTCCAGTTGAGGAAGAGTGGAATGAATGCCTTAATGAAAGTGTTTTGGATAATCCACAAGGAAATTCCTTGCTTAACTTGATGGATATATGGGACTGTTTATGTCAGAATCTCGAAATAAGGGATGTTACCTTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTTTGTGGGGTGGCTCACGGAAGATCCTGGTTCGATAGGTGGGGATACAAATTTTGGATAGGGAGTTATGGAGTAGATGAAGTGAGGTTGCAACAAGGTGGAGGACCAATATGCTCTAGTTCATCGTCTAGAGGGAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

231

Amino Acids

25.85

Weight (kDa)

5.98

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	112, 191
AciI	CCGC	2 cut(s)	81, 191
AclWI	GGATC	2 cut(s)	83, 570
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	442, 602
AfaI	GTAC	2 cut(s)	60, 691
AfiI	CCNNNNNNNGG	1 cut(s)	531
AgsI	TTSAA	2 cut(s)	281, 357
AjnI	CCWGG	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	83, 570
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	299
ApoI	RAATTY	2 cut(s)	442, 602
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	112, 114
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	301
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	166, 230
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	590
BfaI	CTAG	3 cut(s)	242, 669, 681
BfmI	CTRYAG	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	580
BoxI	GACNNNNGTC	1 cut(s)	99
BpiI	GAAGAC	2 cut(s)	166, 230
BpmI	CTGGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	508, 523
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	383
BsePI	GCGCGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	11, 114
Bsh1236I	CGCG	2 cut(s)	112, 191
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	2 cut(s)	345, 410
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	75, 541, 575
BspACI	CCGC	2 cut(s)	81, 191
BspANI	GGCC	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	112, 191
BspMAI	CTGCAG	1 cut(s)	326
BspPI	GGATC	2 cut(s)	83, 570
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	510
BssHII	GCGCGC	1 cut(s)	110
BssMI	GATC	3 cut(s)	75, 541, 575
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	309, 366, 476
Bst6I	CTCTTC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	5 cut(s)	9, 23, 108, 112, 551
BstF5I	GGATG	2 cut(s)	508, 523
BstFNI	CGCG	2 cut(s)	112, 191
BstHHI	GCGC	2 cut(s)	112, 114
BstKTI	GATC	3 cut(s)	78, 544, 578
BstMBI	GATC	3 cut(s)	75, 541, 575
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	580
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	2 cut(s)	112, 191
BstV2I	GAAGAC	2 cut(s)	166, 230
BstX2I	RGATCY	2 cut(s)	75, 575
BstYI	RGATCY	2 cut(s)	75, 575
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	508, 523
BtsI	GCAGTG	2 cut(s)	38, 319
BtsIMutI	CAGTG	2 cut(s)	38, 319
Cac8I	GCNNGC	5 cut(s)	9, 23, 108, 112, 551
CfoI	GCGC	2 cut(s)	112, 114
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	59, 690
CviAII	CATG	4 cut(s)	67, 220, 228, 350
CviJI	RGCY	5 cut(s)	41, 232, 296, 301, 566
CviKI_1	RGCY	5 cut(s)	41, 232, 296, 301, 566
CviQI	GTAC	2 cut(s)	59, 690
DpnI	GATC	3 cut(s)	77, 543, 577
DpnII	GATC	3 cut(s)	75, 541, 575
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	4 cut(s)	70, 223, 231, 353
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	66, 219, 227, 349
FauNDI	CATATG	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	515, 530
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	3 cut(s)	242, 669, 681
GlaI	GCGC	2 cut(s)	111, 113
GluI	GCNGC	1 cut(s)	82
GsaI	CCCAGC	2 cut(s)	15, 118
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	112, 114
Hin1II	CATG	4 cut(s)	70, 223, 231, 353
Hin6I	GCGC	2 cut(s)	110, 112
HinP1I	GCGC	2 cut(s)	110, 112
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	45, 95, 487
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	2 cut(s)	491, 681
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	113, 149, 284
HpyCH4III	ACNGT	3 cut(s)	309, 366, 476
HpyCH4V	TGCA	6 cut(s)	146, 209, 315, 324, 332, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	70, 223, 231, 353
HspAI	GCGC	2 cut(s)	110, 112
Kzo9I	GATC	3 cut(s)	75, 541, 575
LmnI	GCTCC	2 cut(s)	30, 293
LpnPI	CCDG	8 cut(s)	27, 41, 92, 100, 315, 396, 565, 592
MaeI	CTAG	3 cut(s)	242, 669, 681
MaeIII	GTNAC	2 cut(s)	196, 505
MalI	GATC	3 cut(s)	77, 543, 577
MboI	GATC	3 cut(s)	75, 541, 575
MboII	GAAGA	8 cut(s)	166, 175, 235, 271, 293, 404, 536, 585
MflI	RGATCY	2 cut(s)	75, 575
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	5 cut(s)	210, 246, 327, 442, 602
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	54, 89
Mox20I	TGGCCA	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	2 cut(s)	411, 453
Msp20I	TGGCCA	1 cut(s)	301
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	580
Mva1269I	GAATGC	2 cut(s)	345, 410
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	2 cut(s)	112, 191
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	75, 541, 575
NlaIII	CATG	4 cut(s)	70, 223, 231, 353
PauI	GCGCGC	1 cut(s)	110
PctI	GAATGC	2 cut(s)	345, 410
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	2 cut(s)	53, 89
PpsI	GAGTC	2 cut(s)	53, 89
PshAI	GACNNNNGTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	578
PspFI	CCCAGC	2 cut(s)	11, 114
PspGI	CCWGG	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	75, 575
PteI	GCGCGC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	60, 691
RsaNI	GTAC	2 cut(s)	59, 690
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	411, 453
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	3 cut(s)	75, 541, 575
Sau96I	GGNCC	1 cut(s)	656
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	2 cut(s)	54, 89
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	74, 141, 298, 512, 593, 641, 652
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	656
Sse9I	AATT	5 cut(s)	210, 246, 327, 442, 602
SsiI	CCGC	2 cut(s)	81, 191
SspMI	CTAG	3 cut(s)	242, 669, 681
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	309, 366, 476
TaqI	TCGA	4 cut(s)	48, 214, 492, 585
TasI	AATT	5 cut(s)	210, 246, 327, 442, 602
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	411, 453
Tru9I	TTAA	2 cut(s)	411, 453
TscAI	CASTG	2 cut(s)	38, 326
TspDTI	ATGAA	7 cut(s)	236, 338, 359, 417, 429, 645, 663
TspGWI	ACGGA	2 cut(s)	251, 585
TspRI	CASTG	2 cut(s)	38, 326
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	2 cut(s)	442, 602
XbaI	TCTAGA	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	242, 669, 681
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.