Rw2G005990

PHD finger protein MALE MEIOCYTE DEATH

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
5697942 .. 5700052
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005990.1

Sequence Viewer

Length: 1401 bp
ATGAAGACATGGCTGACGGAACTAGCAATTGGGGGTGCGACGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGACCCGTCTTGCAAACACTGCAGAATTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACAGTTCCATATGTTAGTTCCAGTTGAGGAAGTGTGGAATGAATGCCTTAATGAAAGTGTTTTTGTTAACCCACAAGGAAATTCCTTGCTGTATGTGGTGATACACATGAATGCCTATGCCCATTTGCTTTGGATTCAAAGAAGTTCTTCTGGTGTGATGTCTGGCAGTAACCTCATGGACATATGGGACTGTCTATGTAAAAATCTTGAAATAAGAGATGTTACGTTGGAGGATGTTGCCAAGAAAGGGAATGTTGATCTTCGCTTGCTCTGTGGGGTGGCTCACGGAAGATCCTGGTTCAATAGGTGGGGATACAAATTTTGGAGAGGGAGATATGGAGTAGATGAAGTGAAGTATGAGGTTGCCCTAGCTTATCTCCGTAACCTTGACATTTATCAGGTTGTTGAAGTGTTTCACAAGGTGGAGGACCAATATGCTCTAGTTCATCGTCTAGAGAGAGTACTTGAATGTTACGAAAGTCTCAGTCCTTCCCCATTCAAGACTTTAAGTGACTTGCTTGCGTTCGTGCTGACTTATCCTGCCAAATCAATGATGGCAAAAGAGGCACATACCATTGCTAGTATACCCCGCAAAAGTTGGACTAGGGACCAAATAAAGGAGGCGATAACTGTACTGATCAATATACTGGATAAGAGAGGCCCTATAACAAGGGAGGACCTCAGTGAGGCAGCTAGCTCCGAAGTGAGTCCAAGTGAGCTACTGGACTATGCAATTTCAACAATGAAGAATCTGAAGTGTGGGAAGCACCAAATTGTAGCTTGCAAGGAGAATCCAATCTCAAATGTGATGGAGTATGGACTGGAGACTCTTCCTCTCCTAACAACTGAGCCCCTTGATGTTCACCGTGATGCAATTTTTGTATATGAAACTGTTGTTCTACAATACCCCGAAGTCGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACCATGTTAAAATACAATTACCTTATGAAGGGAACTGAACCATGTTGCAAAGGCTCTGGTAAAAAGGTGGAGTGCAAGTGTGGCACGTCTAAAGATGATGGAGAAAGATTCTTGCAATGCAACTTGTGTGAGGCCTATGAGCACTTGAAGTGCAGTGGGATGGATAAAACTGACACCGAGGCATATGTGCATATCTGTGATTGCTGCCTTACAGAACAGAAGGAAAAGCAGCTTGTTGAGGAAGCAAAGGAGAAGAGCAAGGCAGAGCTAGACATTATTGGAGAAGATGAAGTCAGGCAAATCTAA

Protein Analysis

466

Amino Acids

53.03

Weight (kDa)

5.28

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 248 - 324 2e-10 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 727, 1092
AciI CCGC 1 cut(s) 733
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 2 cut(s) 223, 461
AcuI CTGAAG 1 cut(s) 917
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 2 cut(s) 606, 777
AfiI CCNNNNNNNGG 5 cut(s) 390, 760, 829, 1058, 1123
AjiI CACGTC 1 cut(s) 1182
AjnI CCWGG 1 cut(s) 437
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 8 cut(s) 77, 515, 836, 840, 862, 923, 1327, 1363
AluI AGCT 8 cut(s) 77, 515, 836, 840, 862, 923, 1327, 1363
Alw21I GWGCWC 1 cut(s) 1239
Alw26I GTCTC 2 cut(s) 629, 962
AlwI GGATC 1 cut(s) 429
AoxI GGCC 3 cut(s) 80, 802, 1227
ApeKI GCWGC 3 cut(s) 833, 1299, 1324
ApoI RAATTY 2 cut(s) 223, 461
Asp700I GAANNNNTTC 4 cut(s) 126, 146, 289, 555
AspS9I GGNCC 4 cut(s) 571, 751, 803, 820
AsuHPI GGTGA 4 cut(s) 46, 253, 998, 1090
AsuNHI GCTAGC 1 cut(s) 836
AvaII GGWCC 3 cut(s) 571, 751, 820
BalI TGGCCA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 996
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 1239
BbvI GCAGC 3 cut(s) 845, 1286, 1336
BccI CCATC 4 cut(s) 691, 946, 1187, 1249
BciT130I CCWGG 1 cut(s) 439
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 629, 962
BfaI CTAG 8 cut(s) 23, 512, 584, 596, 723, 747, 837, 1364
BfmI CTRYAG 1 cut(s) 103
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 3 cut(s) 834, 1300, 1325
BlsI GCNGC 3 cut(s) 835, 1301, 1326
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 3 cut(s) 571, 751, 820
BmgBI CACGTC 1 cut(s) 1182
BmgT120I GGNCC 4 cut(s) 571, 751, 803, 820
BmiI GGNNCC 1 cut(s) 752
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 1003
BmtI GCTAGC 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 986
BsaJI CCNNGG 1 cut(s) 1272
BsaXI ACNNNNNCTCC 2 cut(s) 1157, 1187
Bsc4I CCNNNNNNNGG 5 cut(s) 390, 760, 829, 1058, 1123
Bse1I ACTGG 4 cut(s) 164, 795, 870, 969
Bse3DI GCAATG 2 cut(s) 717, 1217
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 1272
BseGI GGATG 2 cut(s) 382, 1260
BseLI CCNNNNNNNGG 5 cut(s) 390, 760, 829, 1058, 1123
BseMI GCAATG 2 cut(s) 717, 1217
BseMII CTCAG 3 cut(s) 640, 838, 981
BseNI ACTGG 4 cut(s) 164, 795, 870, 969
BseXI GCAGC 3 cut(s) 845, 1286, 1336
BsgI GTGCAG 1 cut(s) 1267
BshFI GGCC 3 cut(s) 82, 804, 1229
BsiHKAI GWGCWC 1 cut(s) 1239
BslFI GGGAC 2 cut(s) 344, 764
BslI CCNNNNNNNGG 5 cut(s) 390, 760, 829, 1058, 1123
BsmAI GTCTC 2 cut(s) 629, 962
BsmFI GGGAC 2 cut(s) 344, 764
BsmI GAATGC 3 cut(s) 126, 191, 259
BsnI GGCC 3 cut(s) 82, 804, 1229
Bsp1286I GDGCHC 2 cut(s) 996, 1239
Bsp143I GATC 3 cut(s) 400, 434, 780
BspACI CCGC 1 cut(s) 733
BspANI GGCC 3 cut(s) 82, 804, 1229
BspCNI CTCAG 3 cut(s) 639, 837, 982
BspLI GGNNCC 1 cut(s) 752
BspMAI CTGCAG 1 cut(s) 107
BspOI GCTAGC 1 cut(s) 840
BspPI GGATC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 1343
BsrDI GCAATG 2 cut(s) 717, 1217
BsrI ACTGG 4 cut(s) 164, 795, 870, 969
BssECI CCNNGG 1 cut(s) 1272
BssMI GATC 3 cut(s) 400, 434, 780
BssNAI GTATAC 1 cut(s) 728
Bst1107I GTATAC 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 5 cut(s) 147, 335, 775, 1010, 1036
Bst6I CTCTTC 2 cut(s) 978, 1343
BstAPI GCANNNNNTGC 1 cut(s) 102
BstC8I GCNNGC 4 cut(s) 410, 663, 838, 925
BstDEI CTNAG 3 cut(s) 626, 824, 990
BstENI CCTNNNNNAGG 2 cut(s) 827, 1121
BstF5I GGATG 2 cut(s) 382, 1260
BstKTI GATC 3 cut(s) 403, 437, 783
BstMAI GTCTC 2 cut(s) 629, 962
BstMBI GATC 3 cut(s) 400, 434, 780
BstMWI GCNNNNNNNGC 3 cut(s) 102, 707, 1176
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 845, 1286, 1336
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BstZ17I GTATAC 1 cut(s) 728
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 3 cut(s) 82, 804, 1229
BtrI CACGTC 1 cut(s) 1182
BtsCI GGATG 2 cut(s) 382, 1260
BtsI GCAGTG 3 cut(s) 100, 1069, 1255
BtsIMutI CAGTG 4 cut(s) 100, 832, 1069, 1255
Cac8I GCNNGC 4 cut(s) 410, 663, 838, 925
Cfr13I GGNCC 4 cut(s) 571, 751, 803, 820
Csp6I GTAC 2 cut(s) 605, 776
CviAII CATG 6 cut(s) 9, 131, 250, 319, 1099, 1137
CviQI GTAC 2 cut(s) 605, 776
DdeI CTNAG 3 cut(s) 626, 824, 990
DpnI GATC 3 cut(s) 402, 436, 782
DpnII GATC 3 cut(s) 400, 434, 780
DraIII CACNNNGTG 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 978, 1343
EarI CTCTTC 2 cut(s) 978, 1343
Eco147I AGGCCT 1 cut(s) 1229
Eco24I GRGCYC 1 cut(s) 996
Eco47I GGWCC 3 cut(s) 571, 751, 820
Eco57I CTGAAG 1 cut(s) 917
EcoNI CCTNNNNNAGG 2 cut(s) 827, 1121
EcoO109I RGGNCCY 2 cut(s) 803, 820
EcoRII CCWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 996
FaeI CATG 6 cut(s) 12, 134, 253, 322, 1102, 1140
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 2 cut(s) 344, 764
FatI CATG 6 cut(s) 8, 130, 249, 318, 1098, 1136
FauI CCCGC 1 cut(s) 740
FauNDI CATATG 3 cut(s) 153, 326, 1279
FbaI TGATCA 1 cut(s) 780
FblI GTMKAC 2 cut(s) 727, 1092
Fnu4HI GCNGC 3 cut(s) 834, 1300, 1325
FokI GGATG 2 cut(s) 389, 1267
FriOI GRGCYC 1 cut(s) 996
Fsp4HI GCNGC 3 cut(s) 834, 1300, 1325
FspBI CTAG 8 cut(s) 23, 512, 584, 596, 723, 747, 837, 1364
GluI GCNGC 3 cut(s) 834, 1300, 1325
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 3 cut(s) 82, 804, 1229
Hin1II CATG 6 cut(s) 12, 134, 253, 322, 1102, 1140
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 6 cut(s) 277, 850, 892, 934, 970, 1203
HpaI GTTAAC 1 cut(s) 211
HphI GGTGA 4 cut(s) 46, 253, 998, 1090
Hpy166II GTNNAC 4 cut(s) 211, 728, 1006, 1093
Hpy188I TCNGA 2 cut(s) 844, 897
Hpy188III TCNNGA 3 cut(s) 350, 596, 643
Hpy8I GTNNAC 4 cut(s) 211, 728, 1006, 1093
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 4 cut(s) 65, 642, 1117, 1309
HpyCH4III ACNGT 5 cut(s) 147, 335, 775, 1010, 1036
HpyCH4IV ACGT 2 cut(s) 368, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 707, 1176
HpyF3I CTNAG 3 cut(s) 626, 824, 990
HpySE526I ACGT 2 cut(s) 368, 1181
Hsp92II CATG 6 cut(s) 12, 134, 253, 322, 1102, 1140
Ksp22I TGATCA 1 cut(s) 780
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 400, 434, 780
LguI GCTCTTC 1 cut(s) 1343
LmnI GCTCC 2 cut(s) 74, 845
Lsp1109I GCAGC 3 cut(s) 845, 1286, 1336
LweI GCATC 1 cut(s) 1003
MaeI CTAG 8 cut(s) 23, 512, 584, 596, 723, 747, 837, 1364
MaeII ACGT 2 cut(s) 368, 1181
MaeIII GTNAC 5 cut(s) 311, 364, 524, 614, 653
MalI GATC 3 cut(s) 402, 436, 782
MboI GATC 3 cut(s) 400, 434, 780
MboII GAAGA 9 cut(s) 16, 74, 282, 395, 444, 901, 965, 1360, 1391
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 996, 1239
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 8 cut(s) 27, 108, 223, 461, 876, 915, 1017, 1111
MluNI TGGCCA 1 cut(s) 82
MlyI GAGTC 2 cut(s) 859, 964
MmeI TCCRAC 2 cut(s) 351, 722
Mox20I TGGCCA 1 cut(s) 82
MroXI GAANNNNTTC 4 cut(s) 126, 146, 289, 555
MscI TGGCCA 1 cut(s) 82
MseI TTAA 4 cut(s) 192, 210, 650, 1103
MslI CAYNNNNRTG 3 cut(s) 252, 1011, 1290
Msp20I TGGCCA 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 3 cut(s) 126, 191, 259
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 3 cut(s) 102, 707, 1176
NdeI CATATG 3 cut(s) 153, 326, 1279
NdeII GATC 3 cut(s) 400, 434, 780
NheI GCTAGC 1 cut(s) 836
NlaIII CATG 6 cut(s) 12, 134, 253, 322, 1102, 1140
NlaIV GGNNCC 1 cut(s) 752
NmuCI GTSAC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 1229
PciSI GCTCTTC 1 cut(s) 1343
PctI GAATGC 3 cut(s) 126, 191, 259
PdmI GAANNNNTTC 4 cut(s) 126, 146, 289, 555
PfeI GAWTC 4 cut(s) 277, 892, 934, 1203
PkrI GCNGC 3 cut(s) 835, 1301, 1326
PleI GAGTC 2 cut(s) 858, 964
PpsI GAGTC 2 cut(s) 858, 964
PpuMI RGGWCCY 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 752
PspPI GGNCC 4 cut(s) 571, 751, 803, 820
PspPPI RGGWCCY 1 cut(s) 820
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 2 cut(s) 606, 777
RsaNI GTAC 2 cut(s) 605, 776
RseI CAYNNNNRTG 3 cut(s) 252, 1011, 1290
SapI GCTCTTC 1 cut(s) 1343
SaqAI TTAA 4 cut(s) 192, 210, 650, 1103
SatI GCNGC 3 cut(s) 834, 1300, 1325
Sau3AI GATC 3 cut(s) 400, 434, 780
Sau96I GGNCC 4 cut(s) 571, 751, 803, 820
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 2 cut(s) 859, 964
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 2 cut(s) 996, 1239
SfaNI GCATC 1 cut(s) 1003
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 3 cut(s) 571, 751, 820
SmiMI CAYNNNNRTG 3 cut(s) 252, 1011, 1290
Sse9I AATT 8 cut(s) 27, 108, 223, 461, 876, 915, 1017, 1111
SseBI AGGCCT 1 cut(s) 1229
SsiI CCGC 1 cut(s) 733
SspI AATATT 1 cut(s) 1070
SspMI CTAG 8 cut(s) 23, 512, 584, 596, 723, 747, 837, 1364
StuI AGGCCT 1 cut(s) 1229
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 5 cut(s) 147, 335, 775, 1010, 1036
TaiI ACGT 2 cut(s) 371, 1184
TasI AATT 8 cut(s) 27, 108, 223, 461, 876, 915, 1017, 1111
TatI WGTACW 2 cut(s) 604, 775
TfiI GAWTC 4 cut(s) 277, 892, 934, 1203
Tru1I TTAA 4 cut(s) 192, 210, 650, 1103
Tru9I TTAA 4 cut(s) 192, 210, 650, 1103
TscAI CASTG 4 cut(s) 107, 832, 1069, 1255
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 3 cut(s) 833, 1299, 1324
Tsp45I GTSAC 1 cut(s) 653
TspGWI ACGGA 3 cut(s) 32, 444, 512
TspRI CASTG 4 cut(s) 107, 832, 1069, 1255
VpaK11BI GGWCC 3 cut(s) 571, 751, 820
XagI CCTNNNNNAGG 2 cut(s) 827, 1121
XapI RAATTY 2 cut(s) 223, 461
XbaI TCTAGA 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XmiI GTMKAC 2 cut(s) 727, 1092
XmnI GAANNNNTTC 4 cut(s) 126, 146, 289, 555
XspI CTAG 8 cut(s) 23, 512, 584, 596, 723, 747, 837, 1364
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.