Rw6G030990

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004114
Physical Location & Seq
Forward (+)
55075230 .. 55075778
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030990.1

Sequence Viewer

Length: 459 bp
ATGTCTGCCAGTAACCTCATGGACATATGGGACTGTATATGTAAAAATCTCGAAATAAGGGATGTTACATTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTTCGTGGGGTGGCTGACGGAAGATCCTGGTTCAGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCCGTAACCTTGACATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAAGACCAATATGCTCTACTTCATCGTCTAGAGGGAGTACTTGAATGTTACGAAAGTCTCAGTCGTTCCCCATTCAAGACTTTAAGTGACTTGCTTGCGTTCATGCTGACTTATCCTGCCAAATCAATGATGGCAAAAGAGGCATGTACCATTGCTAGGATACCCGCAAAAGTTGGACTAGGAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

152

Amino Acids

17.32

Weight (kDa)

8.25

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 432
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 2 cut(s) 306, 415
AfiI CCNNNNNNNGG 2 cut(s) 90, 423
AgsI TTSAA 3 cut(s) 251, 311, 343
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 224, 329
AlwI GGATC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 276
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 139
BciVI GTATCC 2 cut(s) 149, 420
BcoDI GTCTC 2 cut(s) 224, 329
BfaI CTAG 4 cut(s) 212, 296, 423, 446
BfuI GTATCC 2 cut(s) 149, 420
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 423
Bse1I ACTGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 67, 82
BseLI CCNNNNNNNGG 2 cut(s) 90, 423
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 2 cut(s) 254, 340
BseNI ACTGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 90, 423
BsmAI GTCTC 2 cut(s) 224, 329
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 100, 134
BspACI CCGC 1 cut(s) 432
BspCNI CTCAG 2 cut(s) 253, 339
BspPI GGATC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 9
BssMI GATC 2 cut(s) 100, 134
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 110, 363
BstDEI CTNAG 2 cut(s) 240, 326
BstF5I GGATG 2 cut(s) 67, 82
BstKTI GATC 2 cut(s) 103, 137
BstMAI GTCTC 2 cut(s) 224, 329
BstMBI GATC 2 cut(s) 100, 134
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 2 cut(s) 149, 420
BtsCI GGATG 2 cut(s) 67, 82
Cac8I GCNNGC 2 cut(s) 110, 363
Csp6I GTAC 2 cut(s) 305, 414
CviAII CATG 3 cut(s) 19, 370, 411
CviJI RGCY 2 cut(s) 125, 215
CviKI_1 RGCY 2 cut(s) 125, 215
CviQI GTAC 2 cut(s) 305, 414
DdeI CTNAG 2 cut(s) 240, 326
DpnI GATC 2 cut(s) 102, 136
DpnII GATC 2 cut(s) 100, 134
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 22, 373, 414
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 18, 369, 410
FauI CCCGC 1 cut(s) 439
FauNDI CATATG 1 cut(s) 26
FokI GGATG 2 cut(s) 74, 89
FspBI CTAG 4 cut(s) 212, 296, 423, 446
Hin1II CATG 3 cut(s) 22, 373, 414
Hpy188III TCNNGA 3 cut(s) 50, 296, 343
HpyCH4III ACNGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 240, 326
Hsp92II CATG 3 cut(s) 22, 373, 414
Kzo9I GATC 2 cut(s) 100, 134
LpnPI CCDG 5 cut(s) 22, 124, 151, 227, 396
MaeI CTAG 4 cut(s) 212, 296, 423, 446
MaeIII GTNAC 5 cut(s) 11, 64, 224, 314, 353
MalI GATC 2 cut(s) 102, 136
MboI GATC 2 cut(s) 100, 134
MboII GAAGA 3 cut(s) 95, 144, 281
MflI RGATCY 1 cut(s) 134
MluCI AATT 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 5 cut(s) 26, 67, 164, 292, 400
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeI CATATG 1 cut(s) 26
NdeII GATC 2 cut(s) 100, 134
NlaIII CATG 3 cut(s) 22, 373, 414
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 2 cut(s) 306, 415
RsaNI GTAC 2 cut(s) 305, 414
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 2 cut(s) 100, 134
ScaI AGTACT 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 139
SetI ASST 6 cut(s) 18, 152, 217, 231, 246, 267
Sse9I AATT 1 cut(s) 161
SsiI CCGC 1 cut(s) 432
SspMI CTAG 4 cut(s) 212, 296, 423, 446
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 204, 278, 358
TspGWI ACGGA 2 cut(s) 144, 212
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 2 cut(s) 16, 394
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 4 cut(s) 212, 296, 423, 446
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.