Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

5382422 .. 5424486

Gene Structure 42065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTGCCTACACCATCACCCCGGACAACAAAATCCTGCTCACCGAACAAGGCCTGGCCCATACCCAGCTCGCCGGAACCTACCTCTTCCACGTTGCCTCCGCCGCGTTGTCTTCACTGAAGACAAAATCGAACTTGAAGTTTAGGACTGGATTGTATGAGTCGGAATCGTCGTCGCCACCGCGTACTGAGATGCTTTCGAGGTCATCGCTGGAGGTCAGAGCACCGTTGCGCATGTCAGCGGAGAAGGATGAGAGAGGGAATGGAGGCGCGTTGTCCTTAGATATGAGCTTGCGCTTGTGGATTGAGGAGGTAGCGGAGGCGGAGACTGAGCTCTGCTATATAACGGTTGGAGATGGCAAGCGCTGGCCAAGAGGCCTGGGGCACCAGGACTTGGCTGGATTTGCCGTGCTGAGGTTGGGTTCGACTGAGTCTTCTTCGGGACGGGTATGGTGCTTGCTGGGCCGTGCGTGCTCCGGCGGTGTAGGGCTGGAGTCGAGTTGGAGGTACAGAGCAGGAGGTGGATCTGCTGCAAGACACAAGACCCAAGACGCGGGTTGGCAGGCGCGCTGGGAAGGGCAGAACAGGTGTGGATCTGCTGCAAGACGTAAGACGCGGGTGGGTAGGCGCACTGGGAAGGGCAGAACAGGTGTGGATATGTTGCAAGACGCAAGACGAGGGTGGGCAGGCGCGCTGGGAAGGGCAGAACAGGTGTGGATCTGCTACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTTCATAGGTTAGTTCCAGTTGAGGAAGAGTGGAATGAATGCCTTAATGAAAGTGTTTTGCATAATCCACAAGGAAATTCCTTGCTTAACTTGATGGATATATGGGACTGTTTATGTCAGAATCTCGAAATAAGGGATGTTACCTTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTTTGTGGGGTGGCTCATGGAAGATCCTGGTTCGATAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTTCCCTAGCTTATCTCCGTAACCTTAACATTTATCAGGTTGCAACAAGCTGGAGGACCAATATGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

368

Amino Acids

41.25

Weight (kDa)

9.06

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccII	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
AciI	CCGC	9 cut(s)	102, 105, 182, 242, 317, 323, 480, 554, 616
AclWI	GGATC	4 cut(s)	532, 601, 725, 960
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	832, 992
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	187, 509
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	394, 414, 553, 921
AgsI	TTSAA	2 cut(s)	139, 747
AjnI	CCWGG	4 cut(s)	54, 378, 387, 968
AluBI	AGCT	5 cut(s)	70, 291, 334, 1046, 1086
AluI	AGCT	5 cut(s)	70, 291, 334, 1046, 1086
Alw21I	GWGCWC	3 cut(s)	226, 336, 476
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	532, 601, 725, 960
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	5 cut(s)	52, 57, 368, 376, 463
ApeKI	GCWGC	3 cut(s)	5, 530, 599
ApoI	RAATTY	2 cut(s)	832, 992
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	9 cut(s)	234, 272, 297, 366, 568, 570, 630, 692, 694
AspS9I	GGNCC	3 cut(s)	58, 463, 1092
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	10, 34
AvaII	GGWCC	1 cut(s)	1092
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	3 cut(s)	105, 128, 426
Bbv12I	GWGCWC	3 cut(s)	226, 336, 476
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	517, 586
BccI	CCATC	3 cut(s)	23, 350, 844
BceAI	ACGGC	2 cut(s)	392, 450
BciT130I	CCWGG	4 cut(s)	56, 380, 389, 970
BciVI	GTATCC	1 cut(s)	980
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	1043, 1105
BfoI	RGCGCY	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	980
BisI	GCNGC	4 cut(s)	6, 105, 531, 600
BlsI	GCNGC	4 cut(s)	7, 106, 532, 601
Bme1390I	CCNGG	5 cut(s)	23, 56, 380, 389, 970
Bme18I	GGWCC	1 cut(s)	1092
BmgT120I	GGNCC	3 cut(s)	58, 463, 1092
BmiI	GGNNCC	2 cut(s)	79, 386
BmrFI	CCNGG	5 cut(s)	23, 56, 380, 389, 970
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	3 cut(s)	105, 128, 426
BpmI	CTGGAG	2 cut(s)	233, 512
Bpu10I	CCTNAGC	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	21, 379, 900
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 991, 1021
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 414, 553, 921
Bse1I	ACTGG	3 cut(s)	154, 637, 773
BseBI	CCWGG	4 cut(s)	56, 380, 389, 970
BseDI	CCNNGG	3 cut(s)	21, 379, 900
BseGI	GGATG	3 cut(s)	256, 898, 913
BseLI	CCNNNNNNNGG	4 cut(s)	394, 414, 553, 921
BseMII	CTCAG	4 cut(s)	180, 321, 404, 420
BseNI	ACTGG	3 cut(s)	154, 637, 773
BsePI	GCGCGC	2 cut(s)	566, 690
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	517, 586
BseYI	CCCAGC	4 cut(s)	66, 460, 570, 694
Bsh1236I	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
BshFI	GGCC	5 cut(s)	54, 59, 370, 378, 465
BshNI	GGYRCC	1 cut(s)	384
BsiHKAI	GWGCWC	3 cut(s)	226, 336, 476
BsiSI	CCGG	3 cut(s)	23, 75, 477
BslFI	GGGAC	2 cut(s)	456, 875
BslI	CCNNNNNNNGG	4 cut(s)	394, 414, 553, 921
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	456, 875
BsmI	GAATGC	2 cut(s)	735, 800
BsnI	GGCC	5 cut(s)	54, 59, 370, 378, 465
Bsp1286I	GDGCHC	4 cut(s)	226, 336, 387, 476
Bsp143I	GATC	5 cut(s)	524, 593, 717, 931, 965
BspACI	CCGC	9 cut(s)	102, 105, 182, 242, 317, 323, 480, 554, 616
BspANI	GGCC	5 cut(s)	54, 59, 370, 378, 465
BspCNI	CTCAG	4 cut(s)	181, 322, 405, 421
BspFNI	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
BspLI	GGNNCC	2 cut(s)	79, 386
BspPI	GGATC	4 cut(s)	532, 601, 725, 960
BspT107I	GGYRCC	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	154, 637, 773
BssECI	CCNNGG	3 cut(s)	21, 379, 900
BssHII	GCGCGC	2 cut(s)	566, 690
BssMI	GATC	5 cut(s)	524, 593, 717, 931, 965
BssT1I	CCWWGG	1 cut(s)	900
Bst2UI	CCWGG	4 cut(s)	56, 380, 389, 970
Bst4CI	ACNGT	4 cut(s)	228, 349, 756, 866
Bst6I	CTCTTC	2 cut(s)	92, 777
BstDEI	CTNAG	5 cut(s)	189, 280, 330, 413, 429
BstF5I	GGATG	3 cut(s)	256, 898, 913
BstFNI	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	9 cut(s)	234, 272, 297, 366, 568, 570, 630, 692, 694
BstKTI	GATC	5 cut(s)	527, 596, 720, 934, 968
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	5 cut(s)	524, 593, 717, 931, 965
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 404, 462, 471
BstNI	CCWGG	4 cut(s)	56, 380, 389, 970
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	5 cut(s)	21, 54, 378, 387, 968
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
BstV1I	GCAGC	2 cut(s)	517, 586
BstV2I	GAAGAC	3 cut(s)	105, 128, 426
BstX2I	RGATCY	4 cut(s)	524, 593, 717, 965
BstYI	RGATCY	4 cut(s)	524, 593, 717, 965
BsuI	GTATCC	1 cut(s)	980
BsuRI	GGCC	5 cut(s)	54, 59, 370, 378, 465
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	256, 898, 913
BtsIMutI	CAGTG	2 cut(s)	116, 630
CfoI	GCGC	9 cut(s)	234, 272, 297, 366, 568, 570, 630, 692, 694
Cfr13I	GGNCC	3 cut(s)	58, 463, 1092
CseI	GACGC	3 cut(s)	560, 622, 677
Csp6I	GTAC	2 cut(s)	186, 508
CviAII	CATG	3 cut(s)	235, 740, 959
CviQI	GTAC	2 cut(s)	186, 508
DdeI	CTNAG	5 cut(s)	189, 280, 330, 413, 429
DpnI	GATC	5 cut(s)	526, 595, 719, 933, 967
DpnII	GATC	5 cut(s)	524, 593, 717, 931, 965
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	92, 777
EarI	CTCTTC	2 cut(s)	92, 777
EciI	GGCGGA	2 cut(s)	91, 338
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	900
Eco147I	AGGCCT	2 cut(s)	54, 378
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	1092
Eco47III	AGCGCT	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	4 cut(s)	54, 378, 387, 968
EcoT14I	CCWWGG	1 cut(s)	900
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	900
FaeI	CATG	3 cut(s)	238, 743, 962
FaqI	GGGAC	2 cut(s)	456, 875
FatI	CATG	3 cut(s)	234, 739, 958
FauI	CCCGC	2 cut(s)	547, 609
Fnu4HI	GCNGC	4 cut(s)	6, 105, 531, 600
FokI	GGATG	3 cut(s)	263, 905, 920
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	6, 105, 531, 600
FspBI	CTAG	2 cut(s)	1043, 1105
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	9 cut(s)	233, 271, 296, 365, 567, 569, 629, 691, 693
GluI	GCNGC	4 cut(s)	6, 105, 531, 600
GsaI	CCCAGC	4 cut(s)	70, 464, 574, 698
GsuI	CTGGAG	2 cut(s)	233, 512
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	5 cut(s)	54, 59, 370, 378, 465
HapII	CCGG	3 cut(s)	23, 75, 477
HgaI	GACGC	3 cut(s)	560, 622, 677
HhaI	GCGC	9 cut(s)	234, 272, 297, 366, 568, 570, 630, 692, 694
Hin1II	CATG	3 cut(s)	238, 743, 962
Hin6I	GCGC	9 cut(s)	232, 270, 295, 364, 566, 568, 628, 690, 692
HinP1I	GCGC	9 cut(s)	232, 270, 295, 364, 566, 568, 628, 690, 692
HinfI	GANTC	5 cut(s)	161, 167, 431, 494, 877
HpaII	CCGG	3 cut(s)	23, 75, 477
HphI	GGTGA	2 cut(s)	10, 34
Hpy188I	TCNGA	3 cut(s)	166, 221, 876
Hpy188III	TCNNGA	2 cut(s)	441, 881
Hpy99I	CGWCG	2 cut(s)	175, 178
HpyAV	CCTTC	4 cut(s)	241, 569, 631, 693
HpyCH4III	ACNGT	4 cut(s)	228, 349, 756, 866
HpyCH4IV	ACGT	2 cut(s)	93, 607
HpyCH4V	TGCA	5 cut(s)	533, 602, 664, 817, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 404, 462, 471
HpyF3I	CTNAG	5 cut(s)	189, 280, 330, 413, 429
HpySE526I	ACGT	2 cut(s)	93, 607
Hsp92II	CATG	3 cut(s)	238, 743, 962
HspAI	GCGC	9 cut(s)	232, 270, 295, 364, 566, 568, 628, 690, 692
Kzo9I	GATC	5 cut(s)	524, 593, 717, 931, 965
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	2 cut(s)	517, 586
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	1043, 1105
MaeII	ACGT	2 cut(s)	93, 607
MaeIII	GTNAC	2 cut(s)	895, 1055
MalI	GATC	5 cut(s)	526, 595, 719, 933, 967
MboI	GATC	5 cut(s)	524, 593, 717, 931, 965
MboII	GAAGA	8 cut(s)	79, 105, 133, 426, 429, 794, 926, 975
MflI	RGATCY	4 cut(s)	524, 593, 717, 965
MhlI	GDGCHC	4 cut(s)	226, 336, 387, 476
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	2 cut(s)	832, 992
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	3 cut(s)	170, 440, 503
MmeI	TCCRAC	3 cut(s)	144, 331, 482
Mox20I	TGGCCA	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	3 cut(s)	801, 843, 1062
Msp20I	TGGCCA	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	3 cut(s)	23, 75, 477
MspR9I	CCNGG	5 cut(s)	23, 56, 380, 389, 970
Mva1269I	GAATGC	2 cut(s)	735, 800
MvaI	CCWGG	4 cut(s)	56, 380, 389, 970
MvnI	CGCG	7 cut(s)	107, 184, 272, 554, 568, 616, 692
MwoI	GCNNNNNNNGC	4 cut(s)	104, 404, 462, 471
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	524, 593, 717, 931, 965
NlaIII	CATG	3 cut(s)	238, 743, 962
NlaIV	GGNNCC	2 cut(s)	79, 386
NsbI	TGCGCA	1 cut(s)	233
NspI	RCATGY	1 cut(s)	238
PauI	GCGCGC	2 cut(s)	566, 690
PceI	AGGCCT	2 cut(s)	54, 378
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PctI	GAATGC	2 cut(s)	735, 800
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	167, 877
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	7, 106, 532, 601
PleI	GAGTC	3 cut(s)	169, 439, 502
PpsI	GAGTC	3 cut(s)	169, 439, 502
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	4 cut(s)	54, 378, 387, 968
PspFI	CCCAGC	4 cut(s)	66, 460, 570, 694
PspGI	CCWGG	4 cut(s)	54, 378, 387, 968
PspN4I	GGNNCC	2 cut(s)	79, 386
PspPI	GGNCC	3 cut(s)	58, 463, 1092
PsuI	RGATCY	4 cut(s)	524, 593, 717, 965
PsyI	GACNNNGTC	1 cut(s)	430
PteI	GCGCGC	2 cut(s)	566, 690
RsaI	GTAC	2 cut(s)	187, 509
RsaNI	GTAC	2 cut(s)	186, 508
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	801, 843, 1062
SatI	GCNGC	4 cut(s)	6, 105, 531, 600
Sau3AI	GATC	5 cut(s)	524, 593, 717, 931, 965
Sau96I	GGNCC	3 cut(s)	58, 463, 1092
SchI	GAGTC	3 cut(s)	170, 440, 503
ScrFI	CCNGG	5 cut(s)	23, 56, 380, 389, 970
SduI	GDGCHC	4 cut(s)	226, 336, 387, 476
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	1092
Sse9I	AATT	2 cut(s)	832, 992
SseBI	AGGCCT	2 cut(s)	54, 378
SsiI	CCGC	9 cut(s)	102, 105, 182, 242, 317, 323, 480, 554, 616
SspMI	CTAG	2 cut(s)	1043, 1105
SstI	GAGCTC	1 cut(s)	336
StuI	AGGCCT	2 cut(s)	54, 378
StyD4I	CCNGG	5 cut(s)	21, 54, 378, 387, 968
StyI	CCWWGG	1 cut(s)	900
TaaI	ACNGT	4 cut(s)	228, 349, 756, 866
TaiI	ACGT	2 cut(s)	96, 610
TaqI	TCGA	6 cut(s)	131, 200, 425, 497, 882, 975
TasI	AATT	2 cut(s)	832, 992
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	167, 877
Tru1I	TTAA	3 cut(s)	801, 843, 1062
Tru9I	TTAA	3 cut(s)	801, 843, 1062
TscAI	CASTG	2 cut(s)	123, 637
TseI	GCWGC	3 cut(s)	5, 530, 599
TspDTI	ATGAA	5 cut(s)	728, 749, 807, 819, 1035
TspGWI	ACGGA	1 cut(s)	1043
TspRI	CASTG	2 cut(s)	123, 637
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	1092
XapI	RAATTY	2 cut(s)	832, 992
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	1043, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.