PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G07714 ATMG00550 |
| malus_domestica | MD10G1001200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291 |
| rosa_laevigata | RLG00000016321 |
| rosa_multiflora | Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020 |
| rosa_rugosa | Rorug02G0027300 |
| rosa_samantha | Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700 |
| rosa_wichuraiana | Rw2G005990 Rw6G030990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 129 |
| AcsI | RAATTY | 1 cut(s) | 161 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 90 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 1 cut(s) | 215 |
| AluI | AGCT | 1 cut(s) | 215 |
| AlwI | GGATC | 1 cut(s) | 129 |
| ApoI | RAATTY | 1 cut(s) | 161 |
| AspS9I | GGNCC | 1 cut(s) | 261 |
| AvaII | GGWCC | 1 cut(s) | 261 |
| BccI | CCATC | 1 cut(s) | 13 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BciVI | GTATCC | 1 cut(s) | 149 |
| BfaI | CTAG | 2 cut(s) | 212, 274 |
| BfuI | GTATCC | 1 cut(s) | 149 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| Bme18I | GGWCC | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 261 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 160, 190 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 90 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 90 |
| BsmFI | GGGAC | 1 cut(s) | 44 |
| Bsp143I | GATC | 2 cut(s) | 100, 134 |
| BspPI | GGATC | 1 cut(s) | 129 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 2 cut(s) | 100, 134 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 1 cut(s) | 110 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstKTI | GATC | 2 cut(s) | 103, 137 |
| BstMBI | GATC | 2 cut(s) | 100, 134 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| BsuI | GTATCC | 1 cut(s) | 149 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 1 cut(s) | 261 |
| CviJI | RGCY | 2 cut(s) | 125, 215 |
| CviKI_1 | RGCY | 2 cut(s) | 125, 215 |
| DpnI | GATC | 2 cut(s) | 102, 136 |
| DpnII | GATC | 2 cut(s) | 100, 134 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco47I | GGWCC | 1 cut(s) | 261 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaiI | YATR | 6 cut(s) | 26, 28, 40, 180, 201, 269 |
| FaqI | GGGAC | 1 cut(s) | 44 |
| FokI | GGATG | 1 cut(s) | 74 |
| FspBI | CTAG | 2 cut(s) | 212, 274 |
| HinfI | GANTC | 1 cut(s) | 46 |
| Hpy188I | TCNGA | 1 cut(s) | 45 |
| Hpy188III | TCNNGA | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 1 cut(s) | 248 |
| Kzo9I | GATC | 2 cut(s) | 100, 134 |
| LpnPI | CCDG | 3 cut(s) | 124, 151, 227 |
| MaeI | CTAG | 2 cut(s) | 212, 274 |
| MaeIII | GTNAC | 3 cut(s) | 11, 64, 224 |
| MalI | GATC | 2 cut(s) | 102, 136 |
| MboI | GATC | 2 cut(s) | 100, 134 |
| MboII | GAAGA | 2 cut(s) | 95, 144 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MluCI | AATT | 1 cut(s) | 161 |
| MnlI | CCTC | 3 cut(s) | 67, 164, 252 |
| MseI | TTAA | 1 cut(s) | 231 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| NdeII | GATC | 2 cut(s) | 100, 134 |
| PfeI | GAWTC | 1 cut(s) | 46 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspPI | GGNCC | 1 cut(s) | 261 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| Sau3AI | GATC | 2 cut(s) | 100, 134 |
| Sau96I | GGNCC | 1 cut(s) | 261 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SetI | ASST | 7 cut(s) | 71, 78, 152, 217, 231, 246, 257 |
| SinI | GGWCC | 1 cut(s) | 261 |
| Sse9I | AATT | 1 cut(s) | 161 |
| SspMI | CTAG | 2 cut(s) | 212, 274 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 1 cut(s) | 35 |
| TaqI | TCGA | 2 cut(s) | 51, 144 |
| TasI | AATT | 1 cut(s) | 161 |
| TfiI | GAWTC | 1 cut(s) | 46 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TspDTI | ATGAA | 1 cut(s) | 204 |
| TspGWI | ACGGA | 2 cut(s) | 144, 212 |
| VpaK11BI | GGWCC | 1 cut(s) | 261 |
| XapI | RAATTY | 1 cut(s) | 161 |
| XspI | CTAG | 2 cut(s) | 212, 274 |