Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

55550860 .. 55557945

Gene Structure 7086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG355700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTGGTATACTTTCAGAGGCGACCTTGTTGCACGAGGGTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCGGCCGTGACAGACTATGCGATTCGAGGCATAAAGACATGGCTGACGGAACTAGCAATTGGGGGTGCAACAATACCACTTGTCAGCATTGAAGATGACGAAGGAGCTTGGCCAGACCCGTCTTGCAAACACTGCAGAATTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTCCATATATTAGTTCCAGTTGAGGAAGTGTGGAATGAATGCCTTAATGAAAGTGTTTTGGATAACCCACAAGGAAATTCCTTGCTGTATGTGGTGATACACATGAATGCCTATGCCCATTTGCTTTGGATTCAAAGAAGTTCTTCTGGTGTGATGTCTGCCAGTAACCTCATGGACATATGGGACTGTATATGTAAAAATCTCGAAATAAGGGATGTTACATTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTTCGTGGGGTGGCTGACGGAAGATCCTGGTTCAGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCCGTAACCTTGACATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAGGACCAATATGCTCTACTTCATCGTCTAGAGGGAGTACTTGATTGTTACGAAAGTCTCAGTCGTTCCCCATTCAAGACTTTAAGTGACTTGCTTGCGTTCATGCTGACTTATCCTGCCAAATCAATGATGGCAAAAGAGGCATGTACCATTGCTAGGATACCCGCAAAAGTTGGACTAGGAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

287

Amino Acids

32.46

Weight (kDa)

6.6

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	77, 837
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	2 cut(s)	78, 185
AcsI	RAATTY	2 cut(s)	328, 566
AfaI	GTAC	2 cut(s)	711, 820
AfiI	CCNNNNNNNGG	2 cut(s)	495, 828
AgsI	TTSAA	5 cut(s)	167, 243, 386, 656, 748
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	182, 620
AluI	AGCT	2 cut(s)	182, 620
Alw26I	GTCTC	2 cut(s)	629, 734
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	2 cut(s)	78, 185
ApoI	RAATTY	2 cut(s)	328, 566
Asp700I	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
AspS9I	GGNCC	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	676
BalI	TGGCCA	1 cut(s)	187
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	52
BccI	CCATC	1 cut(s)	796
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	2 cut(s)	554, 825
BcoDI	GTCTC	2 cut(s)	629, 734
BfaI	CTAG	5 cut(s)	128, 617, 701, 828, 851
BfmI	CTRYAG	1 cut(s)	208
BfuI	GTATCC	2 cut(s)	554, 825
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	676
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 828
Bse1I	ACTGG	2 cut(s)	269, 414
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	472, 487
BseLI	CCNNNNNNNGG	2 cut(s)	495, 828
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	659, 745
BseNI	ACTGG	2 cut(s)	269, 414
BseX3I	CGGCCG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 187
BsiEI	CGRYCG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	495, 828
BsmAI	GTCTC	2 cut(s)	629, 734
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	3 cut(s)	231, 296, 364
BsnI	GGCC	2 cut(s)	80, 187
Bsp143I	GATC	2 cut(s)	505, 539
BspACI	CCGC	2 cut(s)	77, 837
BspANI	GGCC	2 cut(s)	80, 187
BspCNI	CTCAG	2 cut(s)	658, 744
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	254
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	269, 414
BssMI	GATC	2 cut(s)	505, 539
BssNAI	GTATAC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	252, 440
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	515, 768
BstDEI	CTNAG	2 cut(s)	645, 731
BstF5I	GGATG	2 cut(s)	472, 487
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	508, 542
BstMAI	GTCTC	2 cut(s)	629, 734
BstMBI	GATC	2 cut(s)	505, 539
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 812
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZ17I	GTATAC	1 cut(s)	9
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	554, 825
BsuRI	GGCC	2 cut(s)	80, 187
BtsCI	GGATG	2 cut(s)	472, 487
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	515, 768
Cfr13I	GGNCC	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	710, 819
CviAII	CATG	6 cut(s)	114, 236, 355, 424, 775, 816
CviJI	RGCY	6 cut(s)	80, 118, 182, 187, 530, 620
CviKI_1	RGCY	6 cut(s)	80, 118, 182, 187, 530, 620
CviQI	GTAC	2 cut(s)	710, 819
DdeI	CTNAG	2 cut(s)	645, 731
DpnI	GATC	2 cut(s)	507, 541
DpnII	GATC	2 cut(s)	505, 539
EaeI	YGGCCR	2 cut(s)	78, 185
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	542
FaeI	CATG	6 cut(s)	117, 239, 358, 427, 778, 819
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	6 cut(s)	113, 235, 354, 423, 774, 815
FauI	CCCGC	1 cut(s)	844
FauNDI	CATATG	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	479, 494
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	5 cut(s)	128, 617, 701, 828, 851
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	80, 187
Hin1II	CATG	6 cut(s)	117, 239, 358, 427, 778, 819
HinfI	GANTC	2 cut(s)	97, 382
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	455, 701, 748
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	252, 440
HpyCH4V	TGCA	5 cut(s)	32, 143, 201, 210, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 812
HpyF3I	CTNAG	2 cut(s)	645, 731
Hsp92II	CATG	6 cut(s)	117, 239, 358, 427, 778, 819
Kzo9I	GATC	2 cut(s)	505, 539
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	8 cut(s)	201, 282, 384, 427, 529, 556, 632, 801
MaeI	CTAG	5 cut(s)	128, 617, 701, 828, 851
MaeIII	GTNAC	6 cut(s)	82, 416, 469, 629, 719, 758
MalI	GATC	2 cut(s)	507, 541
MboI	GATC	2 cut(s)	505, 539
MboII	GAAGA	6 cut(s)	52, 61, 179, 387, 500, 549
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	4 cut(s)	132, 213, 328, 566
MluNI	TGGCCA	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	826
Mox20I	TGGCCA	1 cut(s)	187
MroXI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	2 cut(s)	297, 755
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	3 cut(s)	231, 296, 364
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	207, 812
NdeI	CATATG	1 cut(s)	431
NdeII	GATC	2 cut(s)	505, 539
NlaIII	CATG	6 cut(s)	117, 239, 358, 427, 778, 819
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	82, 758
NspI	RCATGY	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PctI	GAATGC	3 cut(s)	231, 296, 364
PdmI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
PfeI	GAWTC	2 cut(s)	97, 382
PkrI	GCNGC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	2 cut(s)	711, 820
RsaNI	GTAC	2 cut(s)	710, 819
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	297, 755
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	505, 539
Sau96I	GGNCC	1 cut(s)	676
ScaI	AGTACT	1 cut(s)	711
ScrFI	CCNGG	1 cut(s)	544
SetI	ASST	8 cut(s)	27, 184, 423, 557, 622, 636, 651, 672
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	132, 213, 328, 566
SsiI	CCGC	2 cut(s)	77, 837
SspMI	CTAG	5 cut(s)	128, 617, 701, 828, 851
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	252, 440
TaqI	TCGA	2 cut(s)	100, 456
TasI	AATT	4 cut(s)	132, 213, 328, 566
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	97, 382
Tru1I	TTAA	2 cut(s)	297, 755
Tru9I	TTAA	2 cut(s)	297, 755
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	82, 758
Tsp45I	GTSAC	2 cut(s)	82, 758
TspDTI	ATGAA	7 cut(s)	224, 303, 315, 371, 609, 683, 763
TspGWI	ACGGA	3 cut(s)	137, 549, 617
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	2 cut(s)	328, 566
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	1 cut(s)	819
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 799
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
XspI	CTAG	5 cut(s)	128, 617, 701, 828, 851
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.