RLG00000016321

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
5666969 .. 5668621
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016321

Sequence Viewer

Length: 1575 bp
ATGGGGAGCACGAACACGCCTTTACAGAACATTGGTTCTGATACCAATAAGAAACGGTACAGGAAGAAGTTGGACTGGTTGACGAATCAAGAAGATGAACAAGAAGAAGATCATCATGAGAGACGGATTAAAAGACGAACTCGCCCTGCAGATGATGTAGTGGATGAAATTGACCTTGCCCTGCAGGTGAGGAAGTTGAACCTGCCTTGCAAAAGGGTTCAAGGAGAGAGGAAGCCGGAAAAAACAGCCACACGAAGGCACTTAATAAACTTAATAAAGCGAAAGCTAACGACAATACAAAAGGGGGAAGAGGAAGATATCATGAGACTGGTTAAAAGACGAACCACTGGTGCTAATTCGGATCACACTGGCACCAAAGTTGTCGCCTCAACAATAACTTCAAGAAAATATGGTAGGACTTACAATGTGGGTGCTCCTACCTTCAGTGGCAGCAGTAGTACTAGTATTAATCACCTATCAAATTTAGACTGGGCAAGTCTTCCTAATGACATCGTGTTTCTTATTCTGCTTGATAAGCTATTGGAACAAATTGATCATGTTCGTTTTGCTGCCGTTTGTAAGGGATGGCGTTCTGTGGCAAAGGATTATAACCAAACAATGCAGCGCTGGTGTAAGGCACCTCCCATGCTTATGATCCCTATCAAATCCCAAGAGAAAATAAAACATGGCCTCTATGGCGTTTCTGATAGAACACTCTACAGCAATATTCGGTTACCAGTGCCTTATGGTGAGAAGTGTTGTGGCTCTAGCCATGGTTGGTTGTTCACAGTAGACAAATCTTGGAATATAACTCTCCACAATCTCAACCCGGATAGAAATAATGCCAATGGACCAGAGGCTATTCACCTCCCTCCGATTGATCTCAGTCTCTTCTTTAGCTACCTAGATTATAGCTTGGACTTGAGGACTCTGGTAATTCCGAGGATTCTCTTGACTGCCGATCCCACTTTGCATCCAAAAAATTATTCGATTGTAGCATTCTTCAATGACCACGTGCCGTTGATTTTCATGAAAGGAGGACAAAAAGATTGGAATTACAGATACTTTAACGGTAGTATTTCTGATGCCTGGTTTTTTAAAGCTATATTTTATGAAAAATTCGTCTACGCAGTTAGAGATGAAGCACAAGTAGACACTATTAAGGTGACCAGATTCGACATCTATAGCTGTCATGATGTATATGTAATGTATCATAGTGTTAGATCTAGTACTTCTTTGGAAACATATCGTTGTGAGAAGAATTATCTTGTGAAATCAACTAAGGGAGACCTATTGCTTGTTCGAAGATTTTCTACATGGGATGGTCTGGAAATAACTCTGCAAGCTACTACAACCTTTAGGGTTCACAAATTTGTGTTCGAAGACAATGATTTCAAGCTGATTGAGGAAACAAATATTGGAGATGACGCTCTATTCGTAGTACCTAATGAGTATGGTGGTAAAGCATGTGAGATATGTATCTTCAATTTAGAGGACGGAACCATAACAAAACTTGATTCTCTAAACAATTCGGACAGTTTTGAGCCGCTTTGGATCTCACCTAAGGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

60.44

Weight (kDa)

8.72

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 164 - 202 6.5e-06 F-box-like
Beta-prop_KIB1-4 PF03478 232 - 483 4.9e-27 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 2 cut(s) 175, 210
AccB1I GGYRCC 2 cut(s) 371, 637
AccI GTMKAC 3 cut(s) 792, 1125, 1152
AciI CCGC 1 cut(s) 1547
AclWI GGATC 4 cut(s) 369, 649, 956, 1562
AcsI RAATTY 3 cut(s) 481, 1118, 1370
AcuI CTGAAG 1 cut(s) 427
AcvI CACGTG 1 cut(s) 1015
AfaI GTAC 4 cut(s) 59, 460, 1231, 1443
AfeI AGCGCT 1 cut(s) 626
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 6 cut(s) 199, 221, 402, 1006, 1396, 1486
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 1088
AjuI GAANNNNNNNTTGG 4 cut(s) 970, 1002, 1401, 1433
AluBI AGCT 8 cut(s) 286, 538, 900, 915, 1103, 1188, 1346, 1399
AluI AGCT 8 cut(s) 286, 538, 900, 915, 1103, 1188, 1346, 1399
Alw21I GWGCWC 2 cut(s) 11, 436
Alw26I GTCTC 4 cut(s) 115, 319, 893, 1281
AlwI GGATC 4 cut(s) 369, 649, 956, 1562
Aor51HI AGCGCT 1 cut(s) 626
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 3 cut(s) 450, 569, 622
ApoI RAATTY 3 cut(s) 481, 1118, 1370
ArsI GACNNNNNNTTYG 2 cut(s) 1418, 1450
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 1309
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 6 cut(s) 199, 464, 761, 857, 1177, 1551
AsuII TTCGAA 2 cut(s) 1303, 1380
AvaII GGWCC 1 cut(s) 851
AxyI CCTNAGG 1 cut(s) 1563
BanI GGYRCC 2 cut(s) 371, 637
BarI GAAGNNNNNNTAC 2 cut(s) 1297, 1329
BbrPI CACGTG 1 cut(s) 1015
BbsI GAAGAC 2 cut(s) 491, 1389
Bbv12I GWGCWC 2 cut(s) 11, 436
BbvI GCAGC 3 cut(s) 462, 556, 634
BccI CCATC 2 cut(s) 579, 1316
BceAI ACGGC 2 cut(s) 557, 1003
BciT130I CCWGG 1 cut(s) 1090
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 4 cut(s) 115, 319, 893, 1281
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 4 cut(s) 462, 768, 905, 1227
BfmI CTRYAG 4 cut(s) 147, 182, 718, 1183
BfoI RGCGCY 1 cut(s) 628
BfuAI ACCTGC 2 cut(s) 175, 210
BglI GCCNNNNNGGC 1 cut(s) 696
BglII AGATCT 1 cut(s) 1223
BisI GCNGC 4 cut(s) 451, 570, 623, 1547
BlsI GCNGC 4 cut(s) 452, 571, 624, 1548
BmcAI AGTACT 2 cut(s) 460, 1231
Bme1390I CCNGG 2 cut(s) 830, 1090
Bme18I GGWCC 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 3 cut(s) 373, 639, 1501
BmrFI CCNGG 2 cut(s) 830, 1090
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 982, 1075
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 2 cut(s) 491, 1389
Bpu14I TTCGAA 2 cut(s) 1303, 1380
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 1 cut(s) 830
BsaAI YACGTR 1 cut(s) 1015
BsaBI GATNNNNATC 2 cut(s) 659, 1478
BsaI GGTCTC 1 cut(s) 1281
BsaJI CCNNGG 2 cut(s) 772, 941
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 6 cut(s) 80, 333, 352, 373, 494, 737
Bse21I CCTNAGG 1 cut(s) 1563
Bse8I GATNNNNATC 2 cut(s) 659, 1478
BseBI CCWGG 1 cut(s) 1090
BseDI CCNNGG 2 cut(s) 772, 941
BseGI GGATG 4 cut(s) 169, 590, 973, 1327
BseJI GATNNNNATC 2 cut(s) 659, 1478
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 898
BseNI ACTGG 6 cut(s) 80, 333, 352, 373, 494, 737
BseXI GCAGC 3 cut(s) 462, 556, 634
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 2 cut(s) 371, 637
BsiHKAI GWGCWC 2 cut(s) 11, 436
BsiSI CCGG 2 cut(s) 236, 830
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 4 cut(s) 115, 319, 893, 1281
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 998
BsnI GGCC 1 cut(s) 690
Bso31I GGTCTC 1 cut(s) 1281
Bsp119I TTCGAA 2 cut(s) 1303, 1380
Bsp1286I GDGCHC 2 cut(s) 11, 436
Bsp143I GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
Bsp19I CCATGG 1 cut(s) 772
BspACI CCGC 1 cut(s) 1547
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 1 cut(s) 897
BspHI TCATGA 4 cut(s) 115, 321, 1029, 1192
BspLI GGNNCC 3 cut(s) 373, 639, 1501
BspMAI CTGCAG 2 cut(s) 151, 186
BspMI ACCTGC 2 cut(s) 175, 210
BspPI GGATC 4 cut(s) 369, 649, 956, 1562
BspT104I TTCGAA 2 cut(s) 1303, 1380
BspT107I GGYRCC 2 cut(s) 371, 637
BspTNI GGTCTC 1 cut(s) 1281
BsrI ACTGG 6 cut(s) 80, 333, 352, 373, 494, 737
BssECI CCNNGG 2 cut(s) 772, 941
BssMI GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 1090
Bst4CI ACNGT 4 cut(s) 57, 790, 1073, 1538
Bst6I CTCTTC 2 cut(s) 303, 896
BstBAI YACGTR 1 cut(s) 1015
BstBI TTCGAA 2 cut(s) 1303, 1380
BstC8I GCNNGC 1 cut(s) 1344
BstDEI CTNAG 3 cut(s) 884, 1281, 1563
BstDSI CCRYGG 1 cut(s) 772
BstEII GGTNACC 2 cut(s) 732, 1165
BstF5I GGATG 4 cut(s) 169, 590, 973, 1327
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 8 cut(s) 112, 364, 556, 657, 883, 964, 1226, 1557
BstMAI GTCTC 4 cut(s) 115, 319, 893, 1281
BstMBI GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
BstMWI GCNNNNNNNGC 2 cut(s) 535, 696
BstNI CCWGG 1 cut(s) 1090
BstNSI RCATGY 1 cut(s) 1470
BstPI GGTNACC 2 cut(s) 732, 1165
BstSCI CCNGG 2 cut(s) 828, 1088
BstSFI CTRYAG 4 cut(s) 147, 182, 718, 1183
BstV1I GCAGC 3 cut(s) 462, 556, 634
BstV2I GAAGAC 2 cut(s) 491, 1389
BstX2I RGATCY 2 cut(s) 1223, 1554
BstYI RGATCY 2 cut(s) 1223, 1554
Bsu36I CCTNAGG 1 cut(s) 1563
BsuRI GGCC 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 772
BtsCI GGATG 4 cut(s) 169, 590, 973, 1327
BtsIMutI CAGTG 4 cut(s) 345, 366, 451, 744
BveI ACCTGC 2 cut(s) 175, 210
Cac8I GCNNGC 1 cut(s) 1344
CciI TCATGA 4 cut(s) 115, 321, 1029, 1192
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 851
CseI GACGC 1 cut(s) 1436
Csp6I GTAC 4 cut(s) 58, 459, 1230, 1442
CviQI GTAC 4 cut(s) 58, 459, 1230, 1442
DdeI CTNAG 3 cut(s) 884, 1281, 1563
DpnI GATC 8 cut(s) 111, 363, 555, 656, 882, 963, 1225, 1556
DpnII GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
DraI TTTAAA 1 cut(s) 1099
Eam1104I CTCTTC 2 cut(s) 303, 896
EarI CTCTTC 2 cut(s) 303, 896
Eco130I CCWWGG 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 1281
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 851
Eco47III AGCGCT 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 427
Eco72I CACGTG 1 cut(s) 1015
Eco81I CCTNAGG 1 cut(s) 1563
Eco91I GGTNACC 2 cut(s) 732, 1165
EcoO65I GGTNACC 2 cut(s) 732, 1165
EcoRII CCWGG 1 cut(s) 1088
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 115
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 3 cut(s) 792, 1125, 1152
Fnu4HI GCNGC 4 cut(s) 451, 570, 623, 1547
FokI GGATG 4 cut(s) 176, 597, 960, 1334
Fsp4HI GCNGC 4 cut(s) 451, 570, 623, 1547
FspBI CTAG 4 cut(s) 462, 768, 905, 1227
GlaI GCGC 1 cut(s) 626
GluI GCNGC 4 cut(s) 451, 570, 623, 1547
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 1 cut(s) 690
HapII CCGG 2 cut(s) 236, 830
HgaI GACGC 1 cut(s) 1436
HhaI GCGC 1 cut(s) 627
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 5 cut(s) 85, 928, 946, 1173, 1517
HpaII CCGG 2 cut(s) 236, 830
HphI GGTGA 6 cut(s) 199, 464, 761, 857, 1177, 1551
Hpy166II GTNNAC 6 cut(s) 81, 786, 793, 1126, 1153, 1366
Hpy188I TCNGA 7 cut(s) 40, 361, 706, 876, 942, 1084, 1534
Hpy188III TCNNGA 8 cut(s) 89, 116, 322, 402, 952, 1030, 1193, 1328
Hpy8I GTNNAC 6 cut(s) 81, 786, 793, 1126, 1153, 1366
HpyAV CCTTC 2 cut(s) 249, 451
HpyCH4III ACNGT 4 cut(s) 57, 790, 1073, 1538
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 6 cut(s) 149, 184, 210, 622, 973, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 535, 696
HpyF3I CTNAG 3 cut(s) 884, 1281, 1563
HpySE526I ACGT 1 cut(s) 1014
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
LmnI GCTCC 2 cut(s) 6, 439
Lsp1109I GCAGC 3 cut(s) 462, 556, 634
LweI GCATC 2 cut(s) 982, 1075
MaeI CTAG 4 cut(s) 462, 768, 905, 1227
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 2 cut(s) 732, 1165
MalI GATC 8 cut(s) 111, 363, 555, 656, 882, 963, 1225, 1556
MboI GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
MflI RGATCY 2 cut(s) 1223, 1554
MhlI GDGCHC 2 cut(s) 11, 436
MlyI GAGTC 1 cut(s) 922
MmeI TCCRAC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 1309
MseI TTAA 9 cut(s) 129, 263, 272, 333, 468, 1068, 1098, 1161, 1573
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 2 cut(s) 236, 830
MspR9I CCNGG 2 cut(s) 830, 1090
Mva1269I GAATGC 1 cut(s) 998
MvaI CCWGG 1 cut(s) 1090
MwoI GCNNNNNNNGC 2 cut(s) 535, 696
NciI CCSGG 1 cut(s) 830
NcoI CCATGG 1 cut(s) 772
NdeII GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
NlaIV GGNNCC 3 cut(s) 373, 639, 1501
NmuCI GTSAC 1 cut(s) 1165
NspI RCATGY 1 cut(s) 1470
NspV TTCGAA 2 cut(s) 1303, 1380
PagI TCATGA 4 cut(s) 115, 321, 1029, 1192
PaqCI CACCTGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 1434
PctI GAATGC 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 1309
PfeI GAWTC 4 cut(s) 85, 946, 1173, 1517
PkrI GCNGC 4 cut(s) 452, 571, 624, 1548
PleI GAGTC 1 cut(s) 922
PmaCI CACGTG 1 cut(s) 1015
PmlI CACGTG 1 cut(s) 1015
PpsI GAGTC 1 cut(s) 922
Ppu21I YACGTR 1 cut(s) 1015
PshBI ATTAAT 1 cut(s) 468
PsiI TTATAA 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 1088
PspCI CACGTG 1 cut(s) 1015
PspEI GGTNACC 2 cut(s) 732, 1165
PspGI CCWGG 1 cut(s) 1088
PspN4I GGNNCC 3 cut(s) 373, 639, 1501
PspPI GGNCC 1 cut(s) 851
PstI CTGCAG 2 cut(s) 151, 186
PsuI RGATCY 2 cut(s) 1223, 1554
RsaI GTAC 4 cut(s) 59, 460, 1231, 1443
RsaNI GTAC 4 cut(s) 58, 459, 1230, 1442
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 9 cut(s) 129, 263, 272, 333, 468, 1068, 1098, 1161, 1573
SatI GCNGC 4 cut(s) 451, 570, 623, 1547
Sau3AI GATC 8 cut(s) 109, 361, 553, 654, 880, 961, 1223, 1554
Sau96I GGNCC 1 cut(s) 851
SbfI CCTGCAGG 1 cut(s) 186
ScaI AGTACT 2 cut(s) 460, 1231
SchI GAGTC 1 cut(s) 922
ScrFI CCNGG 2 cut(s) 830, 1090
SdaI CCTGCAGG 1 cut(s) 186
SduI GDGCHC 2 cut(s) 11, 436
SfaNI GCATC 2 cut(s) 982, 1075
SfcI CTRYAG 4 cut(s) 147, 182, 718, 1183
SfuI TTCGAA 2 cut(s) 1303, 1380
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
SpeI ACTAGT 1 cut(s) 461
Sse8387I CCTGCAGG 1 cut(s) 186
SsiI CCGC 1 cut(s) 1547
SspI AATATT 2 cut(s) 727, 1417
SspMI CTAG 4 cut(s) 462, 768, 905, 1227
StyD4I CCNGG 2 cut(s) 828, 1088
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 4 cut(s) 57, 790, 1073, 1538
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 4 cut(s) 989, 1176, 1303, 1380
TatI WGTACW 2 cut(s) 458, 1229
TauI GCSGC 1 cut(s) 1549
TfiI GAWTC 4 cut(s) 85, 946, 1173, 1517
Tru1I TTAA 9 cut(s) 129, 263, 272, 333, 468, 1068, 1098, 1161, 1573
Tru9I TTAA 9 cut(s) 129, 263, 272, 333, 468, 1068, 1098, 1161, 1573
TscAI CASTG 4 cut(s) 352, 373, 451, 744
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 3 cut(s) 450, 569, 622
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 6 cut(s) 111, 180, 1018, 1046, 1128, 1155
TspGWI ACGGA 2 cut(s) 139, 1512
TspRI CASTG 4 cut(s) 352, 373, 451, 744
VpaK11BI GGWCC 1 cut(s) 851
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 3 cut(s) 481, 1118, 1370
XceI RCATGY 1 cut(s) 1470
XmiI GTMKAC 3 cut(s) 792, 1125, 1152
XmnI GAANNNNTTC 1 cut(s) 1309
XspI CTAG 4 cut(s) 462, 768, 905, 1227
ZrmI AGTACT 2 cut(s) 460, 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.