Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

47405060 .. 47405872

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATCTGCAGGGATGTTACATTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTCTGTGGGGTGGCTTACGGAAGATCCTGGTTCGGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCCGTAACCTTGACATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAAGACCAATATGCTCTAGTTCATCGTCTAGAGGGAGTACTTGAACGTTACCGACGTCTCAGTCATTCCCCATTCAAGACTTTAAGTGACTTGCTTGTGTTCATTCTGATTTATCCTGCCAAATCAAGGATGGCAAAAGAGGCATGTACCATTGCTAGCATACCCCGCAAAGGTTGGACTAGGGAGCAAATAAACAAGACGTTAAAGGTACTGATCAATATACTGGATAAGAGAGGCCCTGTAAGCGGGGAAGACCTCATTGAGGCAGCTAGCTCCAAAGTAAGTCCAGGTGAGCTACTGGAATATGCGATTTCAACAATGAAGAATCTGAAGTGTGGAATGCACCAAATTGTGGCTTGTAAGGAGAATCCAATCTCAAATCTGACGGAGTATAGTCTGGAGACTGTTCCTCTCCTGACAACTGAGGCCATTGATTATTACGGTGATGCAGTTTTTGTATATGAAACTGTTGTTCTACAATACCCTGAAGGTGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACCATGTTAAATTACAATTACCTTATGAAGGGAACTGAACCAAGTTGCAAAGACTCTGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

270

Amino Acids

30.62

Weight (kDa)

7.49

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	132 - 208	1.2e-06	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
AatII	GACGTC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	2 cut(s)	385, 465
AclI	AACGTT	1 cut(s)	265
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	569, 726
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	3 cut(s)	258, 367, 429
AfiI	CCNNNNNNNGG	8 cut(s)	42, 345, 389, 464, 481, 571, 710, 775
AgsI	TTSAA	5 cut(s)	203, 263, 295, 534, 726
AjnI	CCWGG	2 cut(s)	89, 505
AluBI	AGCT	4 cut(s)	167, 488, 492, 514
AluI	AGCT	4 cut(s)	167, 488, 492, 514
Alw26I	GTCTC	3 cut(s)	176, 281, 614
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	454, 645
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	521, 674, 742
AsuNHI	GCTAGC	2 cut(s)	374, 488
BbsI	GAAGAC	2 cut(s)	228, 477
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	91, 507
BciVI	GTATCC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	3 cut(s)	176, 281, 614
BfaI	CTAG	6 cut(s)	164, 236, 248, 375, 399, 489
BfmI	CTRYAG	1 cut(s)	7
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	91, 507
BmgT120I	GGNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	91, 507
BmsI	GCATC	1 cut(s)	655
BmtI	GCTAGC	2 cut(s)	378, 492
BpiI	GAAGAC	2 cut(s)	228, 477
BpmI	CTGGAG	1 cut(s)	638
BsaHI	GRCGYC	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	8 cut(s)	42, 345, 389, 464, 481, 571, 710, 775
Bse1I	ACTGG	2 cut(s)	447, 522
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	91, 507
BseGI	GGATG	3 cut(s)	19, 34, 354
BseLI	CCNNNNNNNGG	8 cut(s)	42, 345, 389, 464, 481, 571, 710, 775
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	206, 292, 633
BseNI	ACTGG	2 cut(s)	447, 522
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	2 cut(s)	456, 647
BslI	CCNNNNNNNGG	8 cut(s)	42, 345, 389, 464, 481, 571, 710, 775
BsmAI	GTCTC	3 cut(s)	176, 281, 614
BsmBI	CGTCTC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	456, 647
Bsp143I	GATC	4 cut(s)	3, 52, 86, 432
BspACI	CCGC	2 cut(s)	385, 465
BspANI	GGCC	2 cut(s)	456, 647
BspCNI	CTCAG	3 cut(s)	205, 291, 634
BspMAI	CTGCAG	1 cut(s)	11
BspOI	GCTAGC	2 cut(s)	378, 492
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	447, 522
BssMI	GATC	4 cut(s)	3, 52, 86, 432
BssNI	GRCGYC	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	91, 507
Bst4CI	ACNGT	3 cut(s)	625, 662, 688
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	62, 376, 490
BstDEI	CTNAG	3 cut(s)	192, 278, 642
BstENI	CCTNNNNNAGG	2 cut(s)	479, 773
BstF5I	GGATG	3 cut(s)	19, 34, 354
BstKTI	GATC	4 cut(s)	6, 55, 89, 435
BstMAI	GTCTC	3 cut(s)	176, 281, 614
BstMBI	GATC	4 cut(s)	3, 52, 86, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 384, 462
BstNI	CCWGG	2 cut(s)	91, 507
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	89, 505
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	2 cut(s)	228, 477
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	456, 647
BtsCI	GGATG	3 cut(s)	19, 34, 354
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	62, 376, 490
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	3 cut(s)	257, 366, 428
CviAII	CATG	2 cut(s)	363, 751
CviJI	RGCY	8 cut(s)	77, 167, 456, 488, 492, 514, 575, 647
CviKI_1	RGCY	8 cut(s)	77, 167, 456, 488, 492, 514, 575, 647
CviQI	GTAC	3 cut(s)	257, 366, 428
DdeI	CTNAG	3 cut(s)	192, 278, 642
DpnI	GATC	4 cut(s)	5, 54, 88, 434
DpnII	GATC	4 cut(s)	3, 52, 86, 432
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	569, 726
EcoNI	CCTNNNNNAGG	2 cut(s)	479, 773
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	89, 505
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	2 cut(s)	366, 754
FatI	CATG	2 cut(s)	362, 750
FauI	CCCGC	2 cut(s)	392, 458
FbaI	TGATCA	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	3 cut(s)	26, 41, 361
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	6 cut(s)	164, 236, 248, 375, 399, 489
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	456, 647
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	366, 754
HinfI	GANTC	3 cut(s)	544, 586, 800
HphI	GGTGA	3 cut(s)	521, 674, 742
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	327, 549, 603
Hpy188III	TCNNGA	4 cut(s)	248, 295, 617, 634
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	701, 769
HpyCH4III	ACNGT	3 cut(s)	625, 662, 688
HpyCH4IV	ACGT	3 cut(s)	265, 274, 419
HpyCH4V	TGCA	4 cut(s)	9, 562, 668, 795
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 384, 462
HpyF3I	CTNAG	3 cut(s)	192, 278, 642
HpySE526I	ACGT	3 cut(s)	265, 274, 419
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	366, 754
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	3, 52, 86, 432
LmnI	GCTCC	2 cut(s)	403, 497
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	6 cut(s)	164, 236, 248, 375, 399, 489
MaeII	ACGT	3 cut(s)	265, 274, 419
MaeIII	GTNAC	4 cut(s)	16, 176, 266, 305
MalI	GATC	4 cut(s)	5, 54, 88, 434
MboI	GATC	4 cut(s)	3, 52, 86, 432
MboII	GAAGA	5 cut(s)	47, 96, 233, 482, 553
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	4 cut(s)	113, 567, 757, 763
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	9 cut(s)	19, 116, 244, 352, 446, 475, 485, 637, 639
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	3 cut(s)	302, 422, 755
MspR9I	CCNGG	2 cut(s)	91, 507
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	2 cut(s)	91, 507
MwoI	GCNNNNNNNGC	3 cut(s)	359, 384, 462
NdeII	GATC	4 cut(s)	3, 52, 86, 432
NheI	GCTAGC	2 cut(s)	374, 488
NlaIII	CATG	2 cut(s)	366, 754
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	544, 586
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
Psp1406I	AACGTT	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	89, 505
PspGI	CCWGG	2 cut(s)	89, 505
PspPI	GGNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	3 cut(s)	258, 367, 429
RsaNI	GTAC	3 cut(s)	257, 366, 428
SaqAI	TTAA	3 cut(s)	302, 422, 755
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	4 cut(s)	3, 52, 86, 432
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	258
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	2 cut(s)	91, 507
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	7
Sse9I	AATT	4 cut(s)	113, 567, 757, 763
SsiI	CCGC	2 cut(s)	385, 465
SspI	AATATT	1 cut(s)	722
SspMI	CTAG	6 cut(s)	164, 236, 248, 375, 399, 489
StyD4I	CCNGG	2 cut(s)	89, 505
TaaI	ACNGT	3 cut(s)	625, 662, 688
TaiI	ACGT	3 cut(s)	268, 277, 422
TasI	AATT	4 cut(s)	113, 567, 757, 763
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	544, 586
Tru1I	TTAA	3 cut(s)	302, 422, 755
Tru9I	TTAA	3 cut(s)	302, 422, 755
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	6 cut(s)	156, 230, 310, 554, 696, 788
TspGWI	ACGGA	3 cut(s)	96, 164, 620
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	1 cut(s)	571
XagI	CCTNNNNNAGG	2 cut(s)	479, 773
XapI	RAATTY	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	6 cut(s)	164, 236, 248, 375, 399, 489
ZraI	GACGTC	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.