Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

5979215 .. 5980728

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGGTATACTTTCAGAGGCGACCTTCTTGCACGAGGGTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCGGTCGTTACAGACTATGCAATTCGAGGCATGAAGACATGGCTGACGGAACTAGGAATTGGGGGTGCGAAGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGAACCGTCTTGCATACACTGCAGAATTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTTCATATGTTAGTTCCAGTTGAGGAAGAGTGGAATGAATGCCTTAATGAAAGTGTTTTGGATAATCCACAAGGAAATTCCTTGCTTAACTTGATGGATATATGGGACTGTTTATGTCAGAATCTCGAAATAAGGGATGTTACCTTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTTTGTGGGGTGGCTCACGGAAGATCCTGGTTCGATAGGTGGGGATACAAATTTTGGATAGGGAGTTATGGAGTAGATGAAGTGAGGTTGCAACAAGGTGGAGGACCAATATGCTCTAGTTCATCGTCTAGAGGGAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

193

Amino Acids

21.79

Weight (kDa)

5.24

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	328, 488
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	167, 243
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	328, 488
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	187
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	52, 116
BccI	CCATC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	476
BfaI	CTAG	3 cut(s)	128, 555, 567
BfmI	CTRYAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	476
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	52, 116
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	394, 409
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	231, 296
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	427, 461
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	427, 461
BssNAI	GTATAC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	195, 252, 362
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	394, 409
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	430, 464
BstMBI	GATC	2 cut(s)	427, 461
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	52, 116
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	394, 409
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	3 cut(s)	106, 114, 236
CviJI	RGCY	4 cut(s)	118, 182, 187, 452
CviKI_1	RGCY	4 cut(s)	118, 182, 187, 452
CviQI	GTAC	1 cut(s)	576
DpnI	GATC	2 cut(s)	429, 463
DpnII	GATC	2 cut(s)	427, 461
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	3 cut(s)	109, 117, 239
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	105, 113, 235
FauNDI	CATATG	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	8
FokI	GGATG	2 cut(s)	401, 416
FspBI	CTAG	3 cut(s)	128, 555, 567
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	109, 117, 239
HinfI	GANTC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	17, 372
Hpy188III	TCNNGA	2 cut(s)	377, 567
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	35, 170
HpyCH4III	ACNGT	3 cut(s)	195, 252, 362
HpyCH4V	TGCA	6 cut(s)	32, 95, 201, 210, 218, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	109, 117, 239
Kzo9I	GATC	2 cut(s)	427, 461
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	201, 282, 451, 478
MaeI	CTAG	3 cut(s)	128, 555, 567
MaeIII	GTNAC	2 cut(s)	82, 391
MalI	GATC	2 cut(s)	429, 463
MboI	GATC	2 cut(s)	427, 461
MboII	GAAGA	8 cut(s)	52, 61, 121, 157, 179, 290, 422, 471
MflI	RGATCY	1 cut(s)	461
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	5 cut(s)	96, 132, 213, 328, 488
MluNI	TGGCCA	1 cut(s)	187
MnlI	CCTC	9 cut(s)	11, 29, 74, 95, 268, 394, 516, 533, 563
Mox20I	TGGCCA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	2 cut(s)	297, 339
Msp20I	TGGCCA	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	466
Mva1269I	GAATGC	2 cut(s)	231, 296
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	2 cut(s)	427, 461
NlaIII	CATG	3 cut(s)	109, 117, 239
PctI	GAATGC	2 cut(s)	231, 296
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	297, 339
Sau3AI	GATC	2 cut(s)	427, 461
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	466
SetI	ASST	6 cut(s)	27, 184, 398, 479, 527, 538
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	542
Sse9I	AATT	5 cut(s)	96, 132, 213, 328, 488
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	3 cut(s)	128, 555, 567
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	195, 252, 362
TaqI	TCGA	3 cut(s)	100, 378, 471
TasI	AATT	5 cut(s)	96, 132, 213, 328, 488
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	297, 339
Tru9I	TTAA	2 cut(s)	297, 339
TscAI	CASTG	1 cut(s)	212
TspDTI	ATGAA	7 cut(s)	122, 224, 245, 303, 315, 531, 549
TspGWI	ACGGA	2 cut(s)	137, 471
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	2 cut(s)	328, 488
XbaI	TCTAGA	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	128, 555, 567
ZrmI	AGTACT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.