Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

151265 .. 151747

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCTTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

160

Amino Acids

18.17

Weight (kDa)

9.61

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 290
AclWI	GGATC	2 cut(s)	12, 223
AfaI	GTAC	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	2 cut(s)	81, 235
AluI	AGCT	2 cut(s)	81, 235
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	12, 223
Ama87I	CYCGRG	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	363
BccI	CCATC	2 cut(s)	302, 349
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	211
BglII	AGATCT	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bse3DI	GCAATG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	344
BseGI	GGATG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	4, 228, 250
BspACI	CCGC	2 cut(s)	64, 290
BspDI	ATCGAT	1 cut(s)	344
BspPI	GGATC	2 cut(s)	12, 223
BsrDI	GCAATG	1 cut(s)	392
BssMI	GATC	3 cut(s)	4, 228, 250
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	370, 453
BstDEI	CTNAG	2 cut(s)	8, 257
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	7, 231, 253
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	4, 228, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	211
BstX2I	RGATCY	3 cut(s)	4, 228, 250
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	3 cut(s)	4, 228, 250
Bsu15I	ATCGAT	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 417
Cac8I	GCNNGC	2 cut(s)	370, 453
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	5 cut(s)	20, 42, 220, 265, 369
CviJI	RGCY	6 cut(s)	13, 81, 179, 235, 287, 451
CviKI_1	RGCY	6 cut(s)	13, 81, 179, 235, 287, 451
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	8, 257
DpnI	GATC	3 cut(s)	6, 230, 252
DpnII	GATC	3 cut(s)	4, 228, 250
Eco24I	GRGCYC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	5 cut(s)	23, 45, 223, 268, 372
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	19, 41, 219, 264, 368
FauI	CCCGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	289
Hin1II	CATG	5 cut(s)	23, 45, 223, 268, 372
HinfI	GANTC	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	3 cut(s)	167, 299, 423
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	19, 72, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	8, 257
Hsp92II	CATG	5 cut(s)	23, 45, 223, 268, 372
Kzo9I	GATC	3 cut(s)	4, 228, 250
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	94, 190, 245, 433
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	6, 230, 252
MboI	GATC	3 cut(s)	4, 228, 250
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	3 cut(s)	4, 228, 250
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	114, 160
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	139, 384, 443, 449
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	3 cut(s)	4, 228, 250
NlaIII	CATG	5 cut(s)	23, 45, 223, 268, 372
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	59
PsuI	RGATCY	3 cut(s)	4, 228, 250
PsyI	GACNNNGTC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	367
Sau3AI	GATC	3 cut(s)	4, 228, 250
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	5 cut(s)	83, 131, 209, 237, 328
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	114, 160
SsiI	CCGC	2 cut(s)	64, 290
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	114, 160
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	2 cut(s)	79, 417
TspDTI	ATGAA	3 cut(s)	30, 253, 362
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	79, 417
Tth111I	GACNNNGTC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.