Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

6141163 .. 6141645

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG075000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATGGCAAAAGAGGCACATACCATTGCTAGTATACCCCGCAAAAGTTGGACTAGGGACCAAATAGAGGAGGCGATACGGATACTGATCAATATACTGGATAAGAGAGGCCCTATAAGAAGGGAGGACCTCAGTGAGGCAGCTAGCTCCGAAGTGAGTCCAAGTGAGCTACTGGACTATGCAATTTCAACAATGAAGAATCTGAAGTGTGGGAAGCACCAAATTGTAGCTTGCAATGAGAATCTGATCTCAAATGTGATGGAGTATGGACTGGAGACTCTTCCTCTCCTAACAACTGAGCCCCTTGATGTTCACCGTGATGCAGTTTTTGTATATGAAACTGTTGTTCTACAATACCCCGAAGTCGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACCATGTTAAAGTACAATTACCTTATGAAGGGAACTGAACCATGTTGCAAAGGCTCTGGTAAAAAGGTGGAGTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

160

Amino Acids

18.06

Weight (kDa)

5.68

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	17 - 93	1.2e-09	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	34, 399
AciI	CCGC	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	4 cut(s)	67, 136, 365, 430
AgsI	TTSAA	2 cut(s)	189, 381
AluBI	AGCT	4 cut(s)	143, 147, 169, 230
AluI	AGCT	4 cut(s)	143, 147, 169, 230
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	58, 110, 127
AsuHPI	GGTGA	2 cut(s)	305, 397
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	58, 127
BanII	GRGCYC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	3 cut(s)	30, 54, 144
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	58, 127
BmgT120I	GGNCC	3 cut(s)	58, 110, 127
BmiI	GGNNCC	1 cut(s)	59
BmsI	GCATC	1 cut(s)	310
BmtI	GCTAGC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	86
BsaXI	ACNNNNNCTCC	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 136, 365, 430
Bse1I	ACTGG	3 cut(s)	102, 177, 276
Bse3DI	GCAATG	2 cut(s)	24, 241
Bse8I	GATNNNNATC	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	4 cut(s)	67, 136, 365, 430
BseMI	GCAATG	2 cut(s)	24, 241
BseMII	CTCAG	2 cut(s)	145, 288
BseNI	ACTGG	3 cut(s)	102, 177, 276
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	67, 136, 365, 430
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	87, 246
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	144, 289
BspLI	GGNNCC	1 cut(s)	59
BspOI	GCTAGC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	24, 241
BsrI	ACTGG	3 cut(s)	102, 177, 276
BssMI	GATC	2 cut(s)	87, 246
BssNAI	GTATAC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	317, 343
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	145, 232
BstDEI	CTNAG	2 cut(s)	131, 297
BstENI	CCTNNNNNAGG	2 cut(s)	134, 428
BstKTI	GATC	2 cut(s)	90, 249
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	87, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	152
BstZ17I	GTATAC	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	139, 376
Cac8I	GCNNGC	2 cut(s)	145, 232
Cfr13I	GGNCC	3 cut(s)	58, 110, 127
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	406, 444
CviJI	RGCY	7 cut(s)	111, 143, 147, 169, 230, 301, 456
CviKI_1	RGCY	7 cut(s)	111, 143, 147, 169, 230, 301, 456
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	131, 297
DpnI	GATC	2 cut(s)	89, 248
DpnII	GATC	2 cut(s)	87, 246
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	58, 127
Eco57I	CTGAAG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 428
EcoO109I	RGGNCCY	2 cut(s)	110, 127
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	2 cut(s)	409, 447
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	405, 443
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	87
FblI	GTMKAC	2 cut(s)	34, 399
Fnu4HI	GCNGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	3 cut(s)	30, 54, 144
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	409, 447
HinfI	GANTC	4 cut(s)	157, 199, 241, 277
HphI	GGTGA	2 cut(s)	305, 397
Hpy166II	GTNNAC	3 cut(s)	35, 313, 400
Hpy188I	TCNGA	3 cut(s)	151, 204, 246
Hpy8I	GTNNAC	3 cut(s)	35, 313, 400
HpyAV	CCTTC	2 cut(s)	114, 424
HpyCH4III	ACNGT	2 cut(s)	317, 343
HpyCH4V	TGCA	5 cut(s)	182, 234, 323, 450, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	131, 297
Hsp92II	CATG	2 cut(s)	409, 447
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	87, 246
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	4 cut(s)	83, 158, 257, 444
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	3 cut(s)	30, 54, 144
MalI	GATC	2 cut(s)	89, 248
MboI	GATC	2 cut(s)	87, 246
MboII	GAAGA	2 cut(s)	208, 272
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	3 cut(s)	183, 222, 418
MlyI	GAGTC	2 cut(s)	166, 271
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	7, 61, 64, 101, 118, 130, 140, 294
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	87, 246
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	409, 447
NlaIV	GGNNCC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	199, 241
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	165, 271
PpsI	GAGTC	2 cut(s)	165, 271
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	58, 110, 127
PspPPI	RGGWCCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	87, 246
Sau96I	GGNCC	3 cut(s)	58, 110, 127
SchI	GAGTC	2 cut(s)	166, 271
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	132, 145, 149, 171, 232, 426, 471
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	2 cut(s)	58, 127
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	183, 222, 418
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	3 cut(s)	30, 54, 144
TaaI	ACNGT	2 cut(s)	317, 343
TasI	AATT	3 cut(s)	183, 222, 418
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	199, 241
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	2 cut(s)	139, 376
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	209, 351, 443
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	139, 376
VpaK11BI	GGWCC	2 cut(s)	58, 127
XagI	CCTNNNNNAGG	2 cut(s)	134, 428
XmiI	GTMKAC	2 cut(s)	34, 399
XspI	CTAG	3 cut(s)	30, 54, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.