Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

29981 .. 30490

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004296.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgttaacgacaatacaaaagggggaagaggaagatatcatgagactggttaaaagacgaaccagtggtgctaattcggatcacactggcaccaaaattgtagcctcaataataacttcaagaaaatatggtaggacttacaatgtgggtgctcctaccttcagtggcagcagtagtactagtattaatcacctatcaaatttagactgggcaagtcttcctaatgacattgtgtttcttattctgctcgataagctattggaacaaattgatcatgttcgttttgctgccgtttgtaaggaatggcgttctgtggcaaaggattataaccaaacaatgcagcgctggtctaaggcacctcccatgcttatgatccctatcaaatcccaagagaaaataaaatatggcctctatggcgtttctgatagaacactctacagcaatattcggttaccagtgccttatggtgagaagtgttgtggctctagcatggttggttgttcacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

169

Amino Acids

18.95

Weight (kDa)

9.32

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	2 cut(s)	89, 355
AclWI	GGATC	2 cut(s)	87, 367
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	120
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	87, 367
Aor51HI	AGCGCT	1 cut(s)	344
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	168, 287, 340
ApoI	RAATTY	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	182, 479
BanI	GGYRCC	2 cut(s)	89, 355
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	180, 274, 352
BceAI	ACGGC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	180, 486
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	169, 288, 341
BlsI	GCNGC	3 cut(s)	170, 289, 342
BmcAI	AGTACT	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	91, 357
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	377
Bse1I	ACTGG	5 cut(s)	51, 63, 91, 212, 455
Bse8I	GATNNNNATC	1 cut(s)	377
BseJI	GATNNNNATC	1 cut(s)	377
BseNI	ACTGG	5 cut(s)	51, 63, 91, 212, 455
BseXI	GCAGC	3 cut(s)	180, 274, 352
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	2 cut(s)	89, 355
BsiHKAI	GWGCWC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	79, 271, 372
BspANI	GGCC	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	91, 357
BspPI	GGATC	2 cut(s)	87, 367
BspT107I	GGYRCC	2 cut(s)	89, 355
BsrI	ACTGG	5 cut(s)	51, 63, 91, 212, 455
BssMI	GATC	3 cut(s)	79, 271, 372
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	82, 274, 375
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	79, 271, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 414
BstPI	GGTNACC	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	180, 274, 352
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	70, 84, 169, 462
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	4 cut(s)	40, 275, 364, 490
CviJI	RGCY	4 cut(s)	104, 256, 408, 483
CviKI_1	RGCY	4 cut(s)	104, 256, 408, 483
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	81, 273, 374
DpnII	GATC	3 cut(s)	79, 271, 372
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	37
Eco47III	AGCGCT	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	450
EcoO65I	GGTNACC	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	37
FaeI	CATG	4 cut(s)	43, 278, 367, 493
FatI	CATG	4 cut(s)	39, 274, 363, 489
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	169, 288, 341
Fsp4HI	GCNGC	3 cut(s)	169, 288, 341
FspBI	CTAG	2 cut(s)	180, 486
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	169, 288, 341
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	4 cut(s)	43, 278, 367, 493
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	182, 479
Hpy166II	GTNNAC	2 cut(s)	6, 503
Hpy188I	TCNGA	2 cut(s)	79, 424
Hpy188III	TCNNGA	2 cut(s)	40, 120
Hpy8I	GTNNAC	2 cut(s)	6, 503
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 414
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	43, 278, 367, 493
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	271
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	79, 271, 372
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	32, 72, 76, 193, 331, 468
Lsp1109I	GCAGC	3 cut(s)	180, 274, 352
MaeI	CTAG	2 cut(s)	180, 486
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	3 cut(s)	81, 273, 374
MboI	GATC	3 cut(s)	79, 271, 372
MboII	GAAGA	3 cut(s)	38, 44, 209
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	73, 96, 199, 267
MnlI	CCTC	4 cut(s)	22, 115, 369, 419
MseI	TTAA	3 cut(s)	5, 51, 186
MslI	CAYNNNNRTG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	253, 414
NdeII	GATC	3 cut(s)	79, 271, 372
NlaIII	CATG	4 cut(s)	43, 278, 367, 493
NlaIV	GGNNCC	2 cut(s)	91, 357
PagI	TCATGA	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	170, 289, 342
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	91, 357
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	5, 51, 186
SatI	GCNGC	3 cut(s)	169, 288, 341
Sau3AI	GATC	3 cut(s)	79, 271, 372
ScaI	AGTACT	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	161, 195, 258, 361
SfcI	CTRYAG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	4 cut(s)	73, 96, 199, 267
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	180, 486
TaaI	ACNGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	73, 96, 199, 267
TatI	WGTACW	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	5, 51, 186
Tru9I	TTAA	3 cut(s)	5, 51, 186
TscAI	CASTG	4 cut(s)	70, 91, 169, 462
TseI	GCWGC	3 cut(s)	168, 287, 340
TspRI	CASTG	4 cut(s)	70, 91, 169, 462
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	199
XspI	CTAG	2 cut(s)	180, 486
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.