Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

6006125 .. 6007366

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAATGCCTATGCCCATTTGCTTTGGATTCAAAGAAGTTCTTCTGGTGTGATGTCTAGCAGTAACCTCATGGACATATGGGACTGTCTATGTAAAAATCTCGAAATAAGGGATGTTACGTTGGAAGATGTTGCCAAGAAAGGGAATGTTGATCTTCGCTTGCTCTGTGGGGTGGCTTACGGAAGATCCTGGTTCGGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCTGTAACCTTGACATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAGGATCAATATGCTCTAGTTCATCGTCTAAAGAGAATACTTGAATGTTACGAAAGTCTCAGTCCTTCCCCATTCAAGACTTTAAGTGACTTGCTTACGTTCATGCTGACTTATCCTGCCAAATCAATGATGGCAAAAGAGGCACATACCATTGCTAGTATACCCCGCAAAAGTTGGACTAGGGACCAAATAAAGGAGGCGTTAATGGTACTGATCAACATACTGGATAAGAGAGGCCCTATAAGAGGGGAGGACCTCAGTGAGGCAGCTAGCTCCGAAGTGAGTACAAGTGAGCTACTGGACTATGCAATTTCAACAATGAAGAATCTGAAGTGTGCGAGGCACCAAATTGTAGCTTGCAAGGAGAATCCAATCTCAAATCTGATGGAGTATGGACTGGAGACTCTTCCTCTCCTAACAACTGAGCCCCTTGATGTTCACGGTGATGCAGTTTTTGTATATGAAACTGTTGTTCTACAATACCCCGAAGTCGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACCATGTTAAAATACAATTACCTTATGAAGGGAACTGAACCATGTTGCAAAGGCTCTGGTAAAAAGGTGGAGTGCAAGTGTGGCATGTCTAAAGATGATGGAGAAAGATTCTTGAAATGCAACTTGTGTGAGGTCTATGAGTACTTGAAGTGCAGTGGGATGGATAAAACTGACACCGAGGCATATGTGCATATCTGTGATTGCTGCCTTACAGAACAGAAGGAAAAGCAGCTTGTTGCGGAAGCAAAGGAGAAGAGCAAGGCAGAGCTAGACATTATTGGAGAAGATGAAGTCAGGCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

383

Amino Acids

43.47

Weight (kDa)

5.41

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	165 - 241	4.9e-08	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	478, 843
AciI	CCGC	2 cut(s)	484, 1085
AclWI	GGATC	2 cut(s)	180, 330
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	3 cut(s)	528, 604, 989
AfiI	CCNNNNNNNGG	6 cut(s)	141, 511, 563, 580, 809, 874
AgsI	TTSAA	8 cut(s)	32, 302, 362, 394, 633, 825, 961, 994
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	7 cut(s)	266, 587, 591, 613, 674, 1078, 1114
AluI	AGCT	7 cut(s)	266, 587, 591, 613, 674, 1078, 1114
Alw26I	GTCTC	3 cut(s)	275, 380, 713
AlwI	GGATC	2 cut(s)	180, 330
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	3 cut(s)	584, 1050, 1075
ApoI	RAATTY	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	40, 306
AspS9I	GGNCC	3 cut(s)	502, 554, 571
AsuHPI	GGTGA	2 cut(s)	773, 841
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	502, 571
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	596, 1037, 1087
BccI	CCATC	4 cut(s)	442, 697, 938, 1000
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	275, 380, 713
BfaI	CTAG	7 cut(s)	57, 263, 335, 474, 498, 588, 1115
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	585, 1051, 1076
BlsI	GCNGC	3 cut(s)	586, 1052, 1077
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	502, 571
BmgT120I	GGNCC	3 cut(s)	502, 554, 571
BmiI	GGNNCC	2 cut(s)	503, 662
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	754
BmtI	GCTAGC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	1023
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 908, 938
Bsc4I	CCNNNNNNNGG	6 cut(s)	141, 511, 563, 580, 809, 874
Bse1I	ACTGG	3 cut(s)	546, 621, 720
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	1023
BseGI	GGATG	2 cut(s)	118, 1011
BseLI	CCNNNNNNNGG	6 cut(s)	141, 511, 563, 580, 809, 874
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	305, 391, 589, 732
BseNI	ACTGG	3 cut(s)	546, 621, 720
BseXI	GCAGC	3 cut(s)	596, 1037, 1087
BsgI	GTGCAG	1 cut(s)	1018
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	660
BslFI	GGGAC	2 cut(s)	95, 515
BslI	CCNNNNNNNGG	6 cut(s)	141, 511, 563, 580, 809, 874
BsmAI	GTCTC	3 cut(s)	275, 380, 713
BsmFI	GGGAC	2 cut(s)	95, 515
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	151, 185, 322, 531
BspACI	CCGC	2 cut(s)	484, 1085
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	4 cut(s)	304, 390, 588, 733
BspLI	GGNNCC	2 cut(s)	503, 662
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	2 cut(s)	180, 330
BspQI	GCTCTTC	1 cut(s)	1094
BspT107I	GGYRCC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	546, 621, 720
BssECI	CCNNGG	1 cut(s)	1023
BssMI	GATC	4 cut(s)	151, 185, 322, 531
BssNAI	GTATAC	1 cut(s)	479
Bst1107I	GTATAC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	86, 761, 787
Bst6I	CTCTTC	2 cut(s)	729, 1094
BstC8I	GCNNGC	3 cut(s)	161, 589, 676
BstDEI	CTNAG	4 cut(s)	291, 377, 575, 741
BstENI	CCTNNNNNAGG	3 cut(s)	561, 578, 872
BstF5I	GGATG	2 cut(s)	118, 1011
BstKTI	GATC	4 cut(s)	154, 188, 325, 534
BstMAI	GTCTC	3 cut(s)	275, 380, 713
BstMBI	GATC	4 cut(s)	151, 185, 322, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 927
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	596, 1037, 1087
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	118, 1011
BtsI	GCAGTG	2 cut(s)	820, 1006
BtsIMutI	CAGTG	3 cut(s)	583, 820, 1006
Cac8I	GCNNGC	3 cut(s)	161, 589, 676
Cfr13I	GGNCC	3 cut(s)	502, 554, 571
Csp6I	GTAC	3 cut(s)	527, 603, 988
CviAII	CATG	5 cut(s)	70, 421, 850, 888, 931
CviQI	GTAC	3 cut(s)	527, 603, 988
DdeI	CTNAG	4 cut(s)	291, 377, 575, 741
DpnI	GATC	4 cut(s)	153, 187, 324, 533
DpnII	GATC	4 cut(s)	151, 185, 322, 531
Eam1104I	CTCTTC	2 cut(s)	729, 1094
EarI	CTCTTC	2 cut(s)	729, 1094
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	502, 571
Eco57I	CTGAAG	1 cut(s)	668
EcoNI	CCTNNNNNAGG	3 cut(s)	561, 578, 872
EcoO109I	RGGNCCY	2 cut(s)	554, 571
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	747
FaeI	CATG	5 cut(s)	73, 424, 853, 891, 934
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	2 cut(s)	95, 515
FatI	CATG	5 cut(s)	69, 420, 849, 887, 930
FauI	CCCGC	1 cut(s)	491
FauNDI	CATATG	2 cut(s)	77, 1030
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	2 cut(s)	478, 843
Fnu4HI	GCNGC	3 cut(s)	585, 1051, 1076
FokI	GGATG	2 cut(s)	125, 1018
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	3 cut(s)	585, 1051, 1076
FspBI	CTAG	7 cut(s)	57, 263, 335, 474, 498, 588, 1115
GluI	GCNGC	3 cut(s)	585, 1051, 1076
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	555
Hin1II	CATG	5 cut(s)	73, 424, 853, 891, 934
HinfI	GANTC	5 cut(s)	28, 643, 685, 721, 954
HphI	GGTGA	2 cut(s)	773, 841
Hpy166II	GTNNAC	3 cut(s)	479, 757, 844
Hpy188I	TCNGA	3 cut(s)	595, 648, 702
Hpy188III	TCNNGA	3 cut(s)	101, 394, 958
Hpy8I	GTNNAC	3 cut(s)	479, 757, 844
HpyAV	CCTTC	3 cut(s)	393, 868, 1060
HpyCH4III	ACNGT	3 cut(s)	86, 761, 787
HpyCH4IV	ACGT	2 cut(s)	119, 416
HpyCH4V	TGCA	8 cut(s)	626, 678, 767, 894, 921, 966, 999, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 927
HpyF3I	CTNAG	4 cut(s)	291, 377, 575, 741
HpySE526I	ACGT	2 cut(s)	119, 416
Hsp92II	CATG	5 cut(s)	73, 424, 853, 891, 934
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	151, 185, 322, 531
LguI	GCTCTTC	1 cut(s)	1094
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	3 cut(s)	596, 1037, 1087
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	7 cut(s)	57, 263, 335, 474, 498, 588, 1115
MaeII	ACGT	2 cut(s)	119, 416
MaeIII	GTNAC	5 cut(s)	62, 115, 275, 365, 404
MalI	GATC	4 cut(s)	153, 187, 324, 533
MboI	GATC	4 cut(s)	151, 185, 322, 531
MboII	GAAGA	8 cut(s)	33, 137, 146, 195, 652, 716, 1111, 1142
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	4 cut(s)	212, 627, 666, 862
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	2 cut(s)	102, 473
MroXI	GAANNNNTTC	2 cut(s)	40, 306
MseI	TTAA	3 cut(s)	401, 521, 854
MslI	CAYNNNNRTG	2 cut(s)	762, 1041
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	458, 927
NdeI	CATATG	2 cut(s)	77, 1030
NdeII	GATC	4 cut(s)	151, 185, 322, 531
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	5 cut(s)	73, 424, 853, 891, 934
NlaIV	GGNNCC	2 cut(s)	503, 662
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	1094
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	40, 306
PfeI	GAWTC	4 cut(s)	28, 643, 685, 954
PkrI	GCNGC	3 cut(s)	586, 1052, 1077
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	503, 662
PspPI	GGNCC	3 cut(s)	502, 554, 571
PspPPI	RGGWCCY	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	3 cut(s)	528, 604, 989
RsaNI	GTAC	3 cut(s)	527, 603, 988
RseI	CAYNNNNRTG	2 cut(s)	762, 1041
SapI	GCTCTTC	1 cut(s)	1094
SaqAI	TTAA	3 cut(s)	401, 521, 854
SatI	GCNGC	3 cut(s)	585, 1051, 1076
Sau3AI	GATC	4 cut(s)	151, 185, 322, 531
Sau96I	GGNCC	3 cut(s)	502, 554, 571
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	754
SinI	GGWCC	2 cut(s)	502, 571
SmiMI	CAYNNNNRTG	2 cut(s)	762, 1041
Sse9I	AATT	4 cut(s)	212, 627, 666, 862
SsiI	CCGC	2 cut(s)	484, 1085
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	7 cut(s)	57, 263, 335, 474, 498, 588, 1115
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	86, 761, 787
TaiI	ACGT	2 cut(s)	122, 419
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	212, 627, 666, 862
TatI	WGTACW	2 cut(s)	602, 987
TfiI	GAWTC	4 cut(s)	28, 643, 685, 954
Tru1I	TTAA	3 cut(s)	401, 521, 854
Tru9I	TTAA	3 cut(s)	401, 521, 854
TscAI	CASTG	3 cut(s)	583, 820, 1006
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	584, 1050, 1075
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	8 cut(s)	17, 255, 329, 409, 653, 795, 887, 1149
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	3 cut(s)	583, 820, 1006
VpaK11BI	GGWCC	2 cut(s)	502, 571
XagI	CCTNNNNNAGG	3 cut(s)	561, 578, 872
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	2 cut(s)	478, 843
XmnI	GAANNNNTTC	2 cut(s)	40, 306
XspI	CTAG	7 cut(s)	57, 263, 335, 474, 498, 588, 1115
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.