Rh2DG072200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004114
Physical Location & Seq
Forward (+)
5551622 .. 5552092
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG072200.1

Sequence Viewer

Length: 471 bp
ATGAGACTGGTTAAAAGACGAACCAGTGGTGCTAATTCGGATCACACTGGCACCAAAATTGTAGCCTCAATAATAACTTCAAGAAAATATGGTAGGACTTACAATGTGGGTGCTCCTACCTTCAGTGGCAGCAGTAGTACTAGTATTAATCACCTATCAAATTTAGACTGGGCAAGTCTTCCTAATGACATTGTGTTTCTTATTCTGCTCGATAAGCTATTGGAACAAATTGATCATGTTCGTTTTGCTGCCGTTTGTAAGGAATGGCGTTCTGTGGCAAAGGATTATAACCAAACAATGCAGCGCTGGTCTAAGGCACCTCCCATGCTTATGATCCCTATCAAATCCCAAGAGAAAATAAAATATGGCCTCTATGGCGTTTCTGATAGAACACTCTACAGCAATATTCGGTTACCAGTGCCTTATGGTGAGAAGTGTTGTGGCTCTAGCATGGTTGGTTGTTCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

9.66

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 57 - 95 7.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccB1I GGYRCC 2 cut(s) 50, 316
AclWI GGATC 2 cut(s) 48, 328
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 106
AfaI GTAC 1 cut(s) 139
AfeI AGCGCT 1 cut(s) 305
AgsI TTSAA 1 cut(s) 81
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 2 cut(s) 48, 328
Aor51HI AGCGCT 1 cut(s) 305
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 129, 248, 301
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 147
AspLEI GCGC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 143, 440
BanI GGYRCC 2 cut(s) 50, 316
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 141, 235, 313
BceAI ACGGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 447
BfmI CTRYAG 1 cut(s) 397
BfoI RGCGCY 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 130, 249, 302
BlsI GCNGC 3 cut(s) 131, 250, 303
BmcAI AGTACT 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 52, 318
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 338
Bse1I ACTGG 5 cut(s) 12, 24, 52, 173, 416
Bse8I GATNNNNATC 1 cut(s) 338
BseJI GATNNNNATC 1 cut(s) 338
BseNI ACTGG 5 cut(s) 12, 24, 52, 173, 416
BseXI GCAGC 3 cut(s) 141, 235, 313
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 50, 316
BsiHKAI GWGCWC 1 cut(s) 115
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 40, 232, 333
BspANI GGCC 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 52, 318
BspPI GGATC 2 cut(s) 48, 328
BspT107I GGYRCC 2 cut(s) 50, 316
BsrI ACTGG 5 cut(s) 12, 24, 52, 173, 416
BssMI GATC 3 cut(s) 40, 232, 333
Bst4CI ACNGT 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 43, 235, 336
BstMBI GATC 3 cut(s) 40, 232, 333
BstMWI GCNNNNNNNGC 2 cut(s) 214, 375
BstPI GGTNACC 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 141, 235, 313
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 31, 45, 130, 423
CfoI GCGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 236, 325, 451
CviJI RGCY 4 cut(s) 65, 217, 369, 444
CviKI_1 RGCY 4 cut(s) 65, 217, 369, 444
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 42, 234, 335
DpnII GATC 3 cut(s) 40, 232, 333
Eco47III AGCGCT 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 411
EcoO65I GGTNACC 1 cut(s) 411
FaeI CATG 3 cut(s) 239, 328, 454
FaiI YATR 9 cut(s) 90, 237, 288, 326, 332, 366, 375, 426, 452
FatI CATG 3 cut(s) 235, 324, 450
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 130, 249, 302
Fsp4HI GCNGC 3 cut(s) 130, 249, 302
FspBI CTAG 2 cut(s) 141, 447
GlaI GCGC 1 cut(s) 305
GluI GCNGC 3 cut(s) 130, 249, 302
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 1 cut(s) 369
HhaI GCGC 1 cut(s) 306
Hin1II CATG 3 cut(s) 239, 328, 454
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HphI GGTGA 2 cut(s) 143, 440
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 40, 385
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 375
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 3 cut(s) 239, 328, 454
HspAI GCGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 40, 232, 333
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 33, 37, 154, 292, 429
Lsp1109I GCAGC 3 cut(s) 141, 235, 313
MaeI CTAG 2 cut(s) 141, 447
MaeIII GTNAC 1 cut(s) 411
MalI GATC 3 cut(s) 42, 234, 335
MboI GATC 3 cut(s) 40, 232, 333
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 4 cut(s) 34, 57, 160, 228
MnlI CCTC 3 cut(s) 76, 330, 380
MseI TTAA 2 cut(s) 12, 147
MslI CAYNNNNRTG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 214, 375
NdeII GATC 3 cut(s) 40, 232, 333
NlaIII CATG 3 cut(s) 239, 328, 454
NlaIV GGNNCC 2 cut(s) 52, 318
PkrI GCNGC 3 cut(s) 131, 250, 303
PshBI ATTAAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 288
PspEI GGTNACC 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 52, 318
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 12, 147
SatI GCNGC 3 cut(s) 130, 249, 302
Sau3AI GATC 3 cut(s) 40, 232, 333
ScaI AGTACT 1 cut(s) 139
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 122, 156, 219, 322
SfcI CTRYAG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 4 cut(s) 34, 57, 160, 228
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 141, 447
TaaI ACNGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 34, 57, 160, 228
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 2 cut(s) 12, 147
Tru9I TTAA 2 cut(s) 12, 147
TscAI CASTG 4 cut(s) 31, 52, 130, 423
TseI GCWGC 3 cut(s) 129, 248, 301
TspRI CASTG 4 cut(s) 31, 52, 130, 423
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 1 cut(s) 160
XspI CTAG 2 cut(s) 141, 447
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.