Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

245732 .. 245995

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1001200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAAGTTAGTGTGATGGATGTGTCTAAGAAGTACAGGATGGAGTACCGGATGTTGGACGCTGTCACCAGCGGTCGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGTGCTGGGAGCTATGCTCTCACTCAACATTCCTACCAAAAGGCAGTGGATACTCTATCTAGCTTGCCTCTATACCCTTTTCTATTCCAACCAAGGAAACCCTGGACTCGCCTCCAGTCTGTTATTGCCTTTTACCATTCGTTATCGGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

9.48

Isoelectric Point (pI)

20.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	35, 47
AfiI	CCNNNNNNNGG	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	2 cut(s)	120, 171
AluI	AGCT	2 cut(s)	120, 171
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	58
BccI	CCATC	2 cut(s)	10, 34
BciT130I	CCWGG	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	200, 209
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	200, 209
BseGI	GGATG	3 cut(s)	25, 45, 57
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	55
BspACI	CCGC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	200, 209
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	25, 45, 57
BstMCI	CGRYCG	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	25, 45, 57
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	173
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	34, 46
CviJI	RGCY	2 cut(s)	120, 171
CviKI_1	RGCY	2 cut(s)	120, 171
CviQI	GTAC	2 cut(s)	34, 46
DdeI	CTNAG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaiI	YATR	4 cut(s)	87, 102, 123, 181
FokI	GGATG	3 cut(s)	32, 52, 64
FspBI	CTAG	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	206
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	256
HpyF3I	CTNAG	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	22, 62, 82, 99, 196, 223, 236
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	91
MluCI	AATT	2 cut(s)	91, 104
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	36, 220
MnlI	CCTC	2 cut(s)	186, 230
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	35, 47
RsaNI	GTAC	2 cut(s)	34, 46
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	2 cut(s)	122, 173
Sse9I	AATT	2 cut(s)	91, 104
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	200
TasI	AATT	2 cut(s)	91, 104
TatI	WGTACW	1 cut(s)	33
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	17, 117
TspRI	CASTG	1 cut(s)	159
Tth111I	GACNNNGTC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.