Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

6001863 .. 6003068

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGGTATACTTTCAGAGGTGACCTTCTTGCACGAGGCTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCAGCCGTGACAGACTATGCGATTCGAGGCATGAAGACATGGCTGATGGAACTAGCAATTGGGGGTGCGACGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGACCCGTCTTGCAAACACTACAGAATTGCAAGTAAAGTTATGCTAGAAAATGCAAAATGGGACAATTTAGTCCGTAATCTGGACCATACAAAATCAATGATACCTCAACTATCACTAGCTATTTCAGATCATCAAGCCAATTTAAATAAGGTGTGGCTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

7.88

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	182, 308
AluI	AGCT	2 cut(s)	182, 308
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	32, 151
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	187
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	52, 116
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	65
BfaI	CTAG	3 cut(s)	128, 233, 305
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	52, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	187
BssMI	GATC	1 cut(s)	316
BssNAI	GTATAC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	2 cut(s)	52, 116
BstZ17I	GTATAC	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	2 cut(s)	106, 114
CviJI	RGCY	8 cut(s)	39, 80, 118, 182, 187, 308, 326, 346
CviKI_1	RGCY	8 cut(s)	39, 80, 118, 182, 187, 308, 326, 346
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
FaeI	CATG	2 cut(s)	109, 117
FaiI	YATR	6 cut(s)	9, 93, 107, 115, 230, 276
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	105, 113
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	3 cut(s)	128, 233, 305
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	109, 117
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	2 cut(s)	32, 151
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	17, 316
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	35, 170
HpyCH4V	TGCA	4 cut(s)	32, 201, 218, 242
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	109, 117
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	2 cut(s)	201, 254
Lsp1109I	GCAGC	1 cut(s)	89
MaeI	CTAG	3 cut(s)	128, 233, 305
MaeIII	GTNAC	2 cut(s)	20, 82
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	52, 61, 121, 179
MfeI	CAATTG	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	4 cut(s)	132, 213, 253, 328
MluNI	TGGCCA	1 cut(s)	187
MnlI	CCTC	5 cut(s)	11, 29, 74, 95, 303
Mox20I	TGGCCA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	187
MunI	CAATTG	1 cut(s)	132
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	109, 117
NmuCI	GTSAC	2 cut(s)	20, 82
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	271
SetI	ASST	6 cut(s)	22, 27, 184, 295, 310, 342
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	271
SmiI	ATTTAAAT	1 cut(s)	333
Sse9I	AATT	4 cut(s)	132, 213, 253, 328
SspMI	CTAG	3 cut(s)	128, 233, 305
SwaI	ATTTAAAT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	132, 213, 253, 328
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	20, 82
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	20, 82
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	3 cut(s)	128, 233, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.