Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

51010892 .. 51013288

Gene Structure 2397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50510

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAGACATGGCTGACGGAACTAGAAATTGGGGGTGCGACGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCCAGAACCGTCTTGCAAACACTGCAGAATTGCAGACTGCGAAAGCATTCATGTTTCAAAGAAACGGTTCCATATGTTAGTTCCAGTTGAGGAAGTGTGGAATGAATGCCTTAATGAGAGTGTTTTGGATAACCCACAAGGAAATTCCTTGCTGTATGTGGTGATACACATGAATGCCTATGCCCATTTGCTTTGGATTCAAAGAAGTTCTTCTGGTGTGATGTCTGGCAGTAACCTCATGGACATATGGGACTGTCTATGTAAAAATCTCGAAATAAGGGATGTTACATTGGAGGATGTTTCCAAGAAAGGGAATGTTGATCTTCGCTTGCTCTGTGGGGTGGCTTACGGAAGATCCTGGTTCGGTAGGTGGGGATACAAATTTTGGAGAGGGAGTTATGGAGTAGATGAAGTGAAGTATGAGATTGCCCTAGCTTGTCTCCGTAACCTTGACATTTCTCAGGTTGTTGAAGTGTTTCGCAAGGTGGAAGACCAATATGCTCTAGTTCATCGTCTAGAAGGAGTACTTGAACGTTACCGACGTCTCAGTCATTCCCCATTCAAGACTTTAAGTGACTTGCTTGTGTTCATTCTGACTTATCCTGCCAAATCAAGGATGGCAAAAGAGGCATGTACCATTGCAAGCATACCCCGCAAAGGTTGGACTAGGGAGCAAATAAACGAGACGTTAAAGGTACTGATCAATATACTGGATAAGAGAGGCCCTGTAAGCGGGGAAGACCTCATTGAGGCAGCTAGCTCCAAAGTAAGTCCAGGTGAGCTACTGGAATATGTGATTTCAACAATGAAGAATCTGAAGTGTGGAATGCACCAAATTGTGGCTCGTAAGGAGAATCCAATCTCAAATCTGACGGAGTATAGTCTGGAGACTGTTCCTCTCCTGACAACTGAGGCCATTGATTATTACGGTGATGCAGTTTTTGTATATGAAACTGTTGTTCTACAATACCCTGAAGTCGGCAGTGAATATTCAATGGTGAAGTTGTGTGTAGACACCATGTTAAATTGTGCATATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

373

Amino Acids

42.46

Weight (kDa)

5.43

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	248 - 324	1e-08	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	627
AatII	GACGTC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	1092
AciI	CCGC	2 cut(s)	733, 813
AclI	AACGTT	1 cut(s)	613
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	223, 461
AcuI	CTGAAG	2 cut(s)	917, 1074
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	3 cut(s)	606, 715, 777
AfiI	CCNNNNNNNGG	7 cut(s)	390, 693, 737, 812, 829, 919, 1058
AgsI	TTSAA	8 cut(s)	62, 138, 281, 551, 611, 643, 882, 1074
AjnI	CCWGG	2 cut(s)	437, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	5 cut(s)	77, 515, 836, 840, 862
AluI	AGCT	5 cut(s)	77, 515, 836, 840, 862
Alw26I	GTCTC	4 cut(s)	524, 629, 758, 962
AlwI	GGATC	1 cut(s)	429
AoxI	GGCC	3 cut(s)	80, 802, 993
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	2 cut(s)	223, 461
Asp700I	GAANNNNTTC	4 cut(s)	126, 146, 289, 555
AspS9I	GGNCC	1 cut(s)	803
AsuHPI	GGTGA	5 cut(s)	46, 253, 869, 1022, 1090
AsuNHI	GCTAGC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	82
BbsI	GAAGAC	3 cut(s)	11, 576, 825
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	1 cut(s)	691
BciT130I	CCWGG	2 cut(s)	439, 855
BciVI	GTATCC	1 cut(s)	449
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	4 cut(s)	524, 629, 758, 962
BfaI	CTAG	6 cut(s)	23, 512, 584, 596, 747, 837
BfmI	CTRYAG	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
BmcAI	AGTACT	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	439, 855
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	439, 855
BmsI	GCATC	1 cut(s)	1003
BmtI	GCTAGC	1 cut(s)	840
BpiI	GAAGAC	3 cut(s)	11, 576, 825
BpmI	CTGGAG	1 cut(s)	986
BsaHI	GRCGYC	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	7 cut(s)	390, 693, 737, 812, 829, 919, 1058
Bse1I	ACTGG	3 cut(s)	164, 795, 870
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	439, 855
BseGI	GGATG	3 cut(s)	367, 382, 702
BseLI	CCNNNNNNNGG	7 cut(s)	390, 693, 737, 812, 829, 919, 1058
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	554, 640, 981
BseNI	ACTGG	3 cut(s)	164, 795, 870
BseXI	GCAGC	1 cut(s)	845
BshFI	GGCC	3 cut(s)	82, 804, 995
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	7 cut(s)	390, 693, 737, 812, 829, 919, 1058
BsmAI	GTCTC	4 cut(s)	524, 629, 758, 962
BsmBI	CGTCTC	2 cut(s)	629, 758
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	4 cut(s)	126, 191, 259, 912
BsnI	GGCC	3 cut(s)	82, 804, 995
Bsp143I	GATC	3 cut(s)	400, 434, 780
BspACI	CCGC	2 cut(s)	733, 813
BspANI	GGCC	3 cut(s)	82, 804, 995
BspCNI	CTCAG	3 cut(s)	553, 639, 982
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	107
BspOI	GCTAGC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	164, 795, 870
BssMI	GATC	3 cut(s)	400, 434, 780
BssNI	GRCGYC	1 cut(s)	622
Bst2UI	CCWGG	2 cut(s)	439, 855
Bst4CI	ACNGT	6 cut(s)	90, 147, 335, 973, 1010, 1036
BstACI	GRCGYC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	410, 724, 838
BstDEI	CTNAG	3 cut(s)	540, 626, 990
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	3 cut(s)	367, 382, 702
BstKTI	GATC	3 cut(s)	403, 437, 783
BstMAI	GTCTC	4 cut(s)	524, 629, 758, 962
BstMBI	GATC	3 cut(s)	400, 434, 780
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 707, 732, 810
BstNI	CCWGG	2 cut(s)	439, 855
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	2 cut(s)	437, 853
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	3 cut(s)	11, 576, 825
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	3 cut(s)	82, 804, 995
BtsCI	GGATG	3 cut(s)	367, 382, 702
BtsI	GCAGTG	2 cut(s)	100, 1069
BtsIMutI	CAGTG	2 cut(s)	100, 1069
Cac8I	GCNNGC	3 cut(s)	410, 724, 838
Cfr13I	GGNCC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	605, 714, 776
CviAII	CATG	6 cut(s)	9, 131, 250, 319, 711, 1099
CviQI	GTAC	3 cut(s)	605, 714, 776
DdeI	CTNAG	3 cut(s)	540, 626, 990
DpnI	GATC	3 cut(s)	402, 436, 782
DpnII	GATC	3 cut(s)	400, 434, 780
DrdI	GACNNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	917, 1074
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	437, 853
Esp3I	CGTCTC	2 cut(s)	629, 758
FaeI	CATG	6 cut(s)	12, 134, 253, 322, 714, 1102
FalI	AAGNNNNNCTT	4 cut(s)	274, 306, 591, 623
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	6 cut(s)	8, 130, 249, 318, 710, 1098
FauI	CCCGC	2 cut(s)	740, 806
FauNDI	CATATG	2 cut(s)	153, 326
FbaI	TGATCA	1 cut(s)	780
FblI	GTMKAC	1 cut(s)	1092
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	3 cut(s)	374, 389, 709
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	6 cut(s)	23, 512, 584, 596, 747, 837
GluI	GCNGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	986
HaeIII	GGCC	3 cut(s)	82, 804, 995
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	12, 134, 253, 322, 714, 1102
HinfI	GANTC	3 cut(s)	277, 892, 934
HphI	GGTGA	5 cut(s)	46, 253, 869, 1022, 1090
Hpy166II	GTNNAC	1 cut(s)	1093
Hpy188I	TCNGA	3 cut(s)	675, 897, 951
Hpy188III	TCNNGA	5 cut(s)	350, 596, 643, 965, 982
Hpy8I	GTNNAC	1 cut(s)	1093
Hpy99I	CGWCG	2 cut(s)	43, 624
HpyAV	CCTTC	2 cut(s)	65, 593
HpyCH4III	ACNGT	6 cut(s)	90, 147, 335, 973, 1010, 1036
HpyCH4IV	ACGT	3 cut(s)	613, 622, 767
HpyCH4V	TGCA	7 cut(s)	96, 105, 113, 722, 910, 1016, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 707, 732, 810
HpyF3I	CTNAG	3 cut(s)	540, 626, 990
HpySE526I	ACGT	3 cut(s)	613, 622, 767
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	12, 134, 253, 322, 714, 1102
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	3 cut(s)	400, 434, 780
LmnI	GCTCC	3 cut(s)	74, 751, 845
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	1003
MaeI	CTAG	6 cut(s)	23, 512, 584, 596, 747, 837
MaeII	ACGT	3 cut(s)	613, 622, 767
MaeIII	GTNAC	5 cut(s)	311, 364, 524, 614, 653
MalI	GATC	3 cut(s)	402, 436, 782
MboI	GATC	3 cut(s)	400, 434, 780
MboII	GAAGA	8 cut(s)	16, 74, 282, 395, 444, 581, 830, 901
MflI	RGATCY	1 cut(s)	434
MlsI	TGGCCA	1 cut(s)	82
MluCI	AATT	6 cut(s)	27, 108, 223, 461, 915, 1105
MluNI	TGGCCA	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	722
Mox20I	TGGCCA	1 cut(s)	82
MroXI	GAANNNNTTC	4 cut(s)	126, 146, 289, 555
MscI	TGGCCA	1 cut(s)	82
MseI	TTAA	4 cut(s)	192, 650, 770, 1103
MslI	CAYNNNNRTG	2 cut(s)	252, 1117
Msp20I	TGGCCA	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	439, 855
Mva1269I	GAATGC	4 cut(s)	126, 191, 259, 912
MvaI	CCWGG	2 cut(s)	439, 855
MwoI	GCNNNNNNNGC	4 cut(s)	102, 707, 732, 810
NdeI	CATATG	2 cut(s)	153, 326
NdeII	GATC	3 cut(s)	400, 434, 780
NheI	GCTAGC	1 cut(s)	836
NlaIII	CATG	6 cut(s)	12, 134, 253, 322, 714, 1102
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PctI	GAATGC	4 cut(s)	126, 191, 259, 912
PdmI	GAANNNNTTC	4 cut(s)	126, 146, 289, 555
PfeI	GAWTC	3 cut(s)	277, 892, 934
PflMI	CCANNNNNTGG	1 cut(s)	919
PkrI	GCNGC	1 cut(s)	835
Psp1406I	AACGTT	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	437, 853
PspGI	CCWGG	2 cut(s)	437, 853
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	803
PstI	CTGCAG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	3 cut(s)	606, 715, 777
RsaNI	GTAC	3 cut(s)	605, 714, 776
RseI	CAYNNNNRTG	2 cut(s)	252, 1117
SaqAI	TTAA	4 cut(s)	192, 650, 770, 1103
SatI	GCNGC	1 cut(s)	834
Sau3AI	GATC	3 cut(s)	400, 434, 780
Sau96I	GGNCC	1 cut(s)	803
ScaI	AGTACT	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	439, 855
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	252, 1117
Sse9I	AATT	6 cut(s)	27, 108, 223, 461, 915, 1105
SsiI	CCGC	2 cut(s)	733, 813
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	6 cut(s)	23, 512, 584, 596, 747, 837
StyD4I	CCNGG	2 cut(s)	437, 853
TaaI	ACNGT	6 cut(s)	90, 147, 335, 973, 1010, 1036
TaiI	ACGT	3 cut(s)	616, 625, 770
TaqI	TCGA	1 cut(s)	351
TasI	AATT	6 cut(s)	27, 108, 223, 461, 915, 1105
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	3 cut(s)	277, 892, 934
Tru1I	TTAA	4 cut(s)	192, 650, 770, 1103
Tru9I	TTAA	4 cut(s)	192, 650, 770, 1103
TscAI	CASTG	2 cut(s)	107, 1069
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	9 cut(s)	17, 119, 198, 266, 504, 578, 658, 902, 1044
TspGWI	ACGGA	4 cut(s)	32, 444, 512, 968
TspRI	CASTG	2 cut(s)	107, 1069
Van91I	CCANNNNNTGG	1 cut(s)	919
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	2 cut(s)	223, 461
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	1092
XmnI	GAANNNNTTC	4 cut(s)	126, 146, 289, 555
XspI	CTAG	6 cut(s)	23, 512, 584, 596, 747, 837
ZraI	GACGTC	1 cut(s)	623
ZrmI	AGTACT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.